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The map label for this gene is aapQ [H]

Identifier: 209695503

GI number: 209695503

Start: 2202886

End: 2204007

Strand: Reverse

Name: aapQ [H]

Synonym: VSAL_I2056

Alternate gene names: 209695503

Gene position: 2204007-2202886 (Counterclockwise)

Preceding gene: 209695504

Following gene: 209695502

Centisome position: 66.28

GC content: 40.55

Gene sequence:

>1122_bases
ATGTCATCTAAAAATAAAAATATTTTATACAACCCAACATTTCGTGCGATTTTATTTCAGGTGCTTGCAATTACTGCACT
TGGCTTTTTCTTTTACACCATAGTCAACAATGCATTGTCCAATTTAGAATCTCGAGGTATCGGTCTTTCTTTAGTGGAAT
ACGATGAAACATATTCTTATGGTCGCACCTTTATTGTTGGATTGCTGAACACCGCCCTAGTCTCCGTCCTAGGCGTTTTA
TTGGCCACTATTTTAGGCTTTACTGTCGGAATAGCTCGTCTATCAAGTAACTGGCTAGTTAGCCGCTGTGCTGCTGTCTA
TATCGAAACGTTCCGAAATATCCCTCTTTTGCTACAAATCTTTTTTTGGTATTTTGCCGTTTTACCTGCCCTCCCTTCAC
CTCGACAAAGTTTAAGCTTAGGTGAAAGTATTTTCCTCAATGTTCGAGGCTTATTTTTTCCGAGCCCCATTTTTGAAGAA
GGTTCTAATCTAATAGGAATGGCCGTCGTCCTTGCTATTGTGTTTATTATTTTCTTATCACGTTGGGCACATAACAAACA
AACCCTAACCGGACAACAAACTCCCGTTGTGCGCTACTCCATTTTGTTGTTAATCGCGTTACCTACTCTCGCTTATTTCA
TTTCTGGTATGCCCGTTTCGATTGAATACCCAGAGCTCAAAGGATTTAACTTTCGTGGTGGCATCAGTATCATTCCTGAA
TTAGCGGCACTGGTGGTGGCACTGAGTGTTTATACCGCCTCATTTATCGCAGAGATTGTTCGTTCAGGCATTAATGCGGT
AAGTTACGGCCAAACAGAGGCTGCGATGGCACTTGGTTTACCAAGAAATAAAACACTAAAACTTGTCGTTATTCCACAAG
CAATGCGGATCATCATTCCCCCTCTAACCAGTCAATATTTAAACTTAACCAAAAACTCGTCATTAGCGATGGCTATCGGT
TATCCAGATTTAGTTTCTGTATTTGCAGGAACGACACTGAACCAAACAGGACAAGCTATCGAAATCATAACAATGACAAT
GGGCGTGTACCTTACATTAAGCCTGCTAACCTCATTCGTTATGAACATTTATAACAACAAAGTCGCATTGGTTGAGAGGT
AA

Upstream 100 bases:

>100_bases
CCAATCCGTTAATAATCCCACAATAAAAACAATAAATAGACGTCATATTATGGGGTGAGTTTTCACCCCTTTTAATAAAT
GGATTTAAGGTTGTAGCCGT

Downstream 100 bases:

>100_bases
TTATGAATACACATCAGTTTCAGCCAGATCTGCCGCCACCACCCAATACGGTAGGTGCTGTCACGTGGCTTAAAAGACAT
TTATTCAATGGTCCAATTAA

Product: general L-amino acid ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSSKNKNILYNPTFRAILFQVLAITALGFFFYTIVNNALSNLESRGIGLSLVEYDETYSYGRTFIVGLLNTALVSVLGVL
LATILGFTVGIARLSSNWLVSRCAAVYIETFRNIPLLLQIFFWYFAVLPALPSPRQSLSLGESIFLNVRGLFFPSPIFEE
GSNLIGMAVVLAIVFIIFLSRWAHNKQTLTGQQTPVVRYSILLLIALPTLAYFISGMPVSIEYPELKGFNFRGGISIIPE
LAALVVALSVYTASFIAEIVRSGINAVSYGQTEAAMALGLPRNKTLKLVVIPQAMRIIIPPLTSQYLNLTKNSSLAMAIG
YPDLVSVFAGTTLNQTGQAIEIITMTMGVYLTLSLLTSFVMNIYNNKVALVER

Sequences:

>Translated_373_residues
MSSKNKNILYNPTFRAILFQVLAITALGFFFYTIVNNALSNLESRGIGLSLVEYDETYSYGRTFIVGLLNTALVSVLGVL
LATILGFTVGIARLSSNWLVSRCAAVYIETFRNIPLLLQIFFWYFAVLPALPSPRQSLSLGESIFLNVRGLFFPSPIFEE
GSNLIGMAVVLAIVFIIFLSRWAHNKQTLTGQQTPVVRYSILLLIALPTLAYFISGMPVSIEYPELKGFNFRGGISIIPE
LAALVVALSVYTASFIAEIVRSGINAVSYGQTEAAMALGLPRNKTLKLVVIPQAMRIIIPPLTSQYLNLTKNSSLAMAIG
YPDLVSVFAGTTLNQTGQAIEIITMTMGVYLTLSLLTSFVMNIYNNKVALVER
>Mature_372_residues
SSKNKNILYNPTFRAILFQVLAITALGFFFYTIVNNALSNLESRGIGLSLVEYDETYSYGRTFIVGLLNTALVSVLGVLL
ATILGFTVGIARLSSNWLVSRCAAVYIETFRNIPLLLQIFFWYFAVLPALPSPRQSLSLGESIFLNVRGLFFPSPIFEEG
SNLIGMAVVLAIVFIIFLSRWAHNKQTLTGQQTPVVRYSILLLIALPTLAYFISGMPVSIEYPELKGFNFRGGISIIPEL
AALVVALSVYTASFIAEIVRSGINAVSYGQTEAAMALGLPRNKTLKLVVIPQAMRIIIPPLTSQYLNLTKNSSLAMAIGY
PDLVSVFAGTTLNQTGQAIEIITMTMGVYLTLSLLTSFVMNIYNNKVALVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=378, Percent_Identity=55.026455026455, Blast_Score=386, Evalue=1e-108,
Organism=Escherichia coli, GI1786874, Length=148, Percent_Identity=33.1081081081081, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786873, Length=130, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788226, Length=143, Percent_Identity=31.4685314685315, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787030, Length=138, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082239, Length=97, Percent_Identity=37.1134020618557, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40914; Mature: 40783

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKNKNILYNPTFRAILFQVLAITALGFFFYTIVNNALSNLESRGIGLSLVEYDETYSY
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
GRTFIVGLLNTALVSVLGVLLATILGFTVGIARLSSNWLVSRCAAVYIETFRNIPLLLQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHH
FFWYFAVLPALPSPRQSLSLGESIFLNVRGLFFPSPIFEEGSNLIGMAVVLAIVFIIFLS
HHHHHHHHHCCCCCHHHHHCCCHHEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
RWAHNKQTLTGQQTPVVRYSILLLIALPTLAYFISGMPVSIEYPELKGFNFRGGISIIPE
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
LAALVVALSVYTASFIAEIVRSGINAVSYGQTEAAMALGLPRNKTLKLVVIPQAMRIIIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCHHHHEEC
PLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIITMTMGVYLTLSLLTSFV
CHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
MNIYNNKVALVER
HHHHCCCEEEEEC
>Mature Secondary Structure 
SSKNKNILYNPTFRAILFQVLAITALGFFFYTIVNNALSNLESRGIGLSLVEYDETYSY
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
GRTFIVGLLNTALVSVLGVLLATILGFTVGIARLSSNWLVSRCAAVYIETFRNIPLLLQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHH
FFWYFAVLPALPSPRQSLSLGESIFLNVRGLFFPSPIFEEGSNLIGMAVVLAIVFIIFLS
HHHHHHHHHCCCCCHHHHHCCCHHEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
RWAHNKQTLTGQQTPVVRYSILLLIALPTLAYFISGMPVSIEYPELKGFNFRGGISIIPE
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
LAALVVALSVYTASFIAEIVRSGINAVSYGQTEAAMALGLPRNKTLKLVVIPQAMRIIIP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCHHHHEEC
PLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIITMTMGVYLTLSLLTSFV
CHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
MNIYNNKVALVER
HHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]