| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695488
Identifier: 209695488
GI number: 209695488
Start: 2185049
End: 2185600
Strand: Reverse
Name: 209695488
Synonym: VSAL_I2039
Alternate gene names: NA
Gene position: 2185600-2185049 (Counterclockwise)
Preceding gene: 209695491
Following gene: 209695487
Centisome position: 65.73
GC content: 40.58
Gene sequence:
>552_bases ATGATTCGTAAGACACTTTTAGCATCAAGCCTTATGTTTGTTTCTGCAACATCTATGGCTGCAGATAATGACCCAAACAA TGCCATTATGAGCAACTTCAGTTATGACTATGTTGAAGCTCGCATTGGTTTTAGCCCATCAACATTTGGTGCAGGCTTTA GTAAATCAATTCACCCAAATGCTCACGCAATTGCAACTATCGATTCTGAATTAGATGGCGATTACGACTTAGCGGCAGGC CTTGGCTTTCATGCTCCAGTAAATAACTGGGCTGACATTACAGGTGAAATGCTTTTACGTGTTGTTGATGATAATCACAA CTACAAAAACGATACAGGTATGGAACTAAACCTTGGCGTTCGTCAATGGTTAGGTCCACAGGTAGAAGTCGGCGGAAAAG TAGGTTACCTATCAATTGATGATAAAGATGACACTTTATTCTCAGTTTACGGTCGTTTCCACTCTACCGAGCTATTCTCT ATTGGTGCAGAAGGTCGATTCAATGGCTTATATGGCGATCAATTGATGCTTACAGCACGCTTTAAATACTAA
Upstream 100 bases:
>100_bases TTCCAATTTTATACATTCTATCTGGCAAAAATACCTATTTCTGTTAGTATTTAAACCATATTTTTGTTAATAGCACTCAA TTTGATAGGTTTCAAATATC
Downstream 100 bases:
>100_bases ATTTTAGTCTCTTGAATAAACAGGCCTAGCTCATTTATTCAAGCATAAAAAAACCTCGTTATTCTTTCTATTTAAAAATA AAGAATAGCGAGGTTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MIRKTLLASSLMFVSATSMAADNDPNNAIMSNFSYDYVEARIGFSPSTFGAGFSKSIHPNAHAIATIDSELDGDYDLAAG LGFHAPVNNWADITGEMLLRVVDDNHNYKNDTGMELNLGVRQWLGPQVEVGGKVGYLSIDDKDDTLFSVYGRFHSTELFS IGAEGRFNGLYGDQLMLTARFKY
Sequences:
>Translated_183_residues MIRKTLLASSLMFVSATSMAADNDPNNAIMSNFSYDYVEARIGFSPSTFGAGFSKSIHPNAHAIATIDSELDGDYDLAAG LGFHAPVNNWADITGEMLLRVVDDNHNYKNDTGMELNLGVRQWLGPQVEVGGKVGYLSIDDKDDTLFSVYGRFHSTELFS IGAEGRFNGLYGDQLMLTARFKY >Mature_183_residues MIRKTLLASSLMFVSATSMAADNDPNNAIMSNFSYDYVEARIGFSPSTFGAGFSKSIHPNAHAIATIDSELDGDYDLAAG LGFHAPVNNWADITGEMLLRVVDDNHNYKNDTGMELNLGVRQWLGPQVEVGGKVGYLSIDDKDDTLFSVYGRFHSTELFS IGAEGRFNGLYGDQLMLTARFKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20080; Mature: 20080
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRKTLLASSLMFVSATSMAADNDPNNAIMSNFSYDYVEARIGFSPSTFGAGFSKSIHPN CCCHHHHHHHHHHHEEHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC AHAIATIDSELDGDYDLAAGLGFHAPVNNWADITGEMLLRVVDDNHNYKNDTGMELNLGV CEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCEEECCH RQWLGPQVEVGGKVGYLSIDDKDDTLFSVYGRFHSTELFSIGAEGRFNGLYGDQLMLTAR HHHCCCCEEECCEEEEEEECCCCCEEEEEHHCCCCCEEEEECCCCCCCCCCCCEEEEEEE FKY ECC >Mature Secondary Structure MIRKTLLASSLMFVSATSMAADNDPNNAIMSNFSYDYVEARIGFSPSTFGAGFSKSIHPN CCCHHHHHHHHHHHEEHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC AHAIATIDSELDGDYDLAAGLGFHAPVNNWADITGEMLLRVVDDNHNYKNDTGMELNLGV CEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCCEEECCH RQWLGPQVEVGGKVGYLSIDDKDDTLFSVYGRFHSTELFSIGAEGRFNGLYGDQLMLTAR HHHCCCCEEECCEEEEEEECCCCCEEEEEHHCCCCCEEEEECCCCCCCCCCCCEEEEEEE FKY ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA