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The map label for this gene is nrfC [H]

Identifier: 209695456

GI number: 209695456

Start: 2141077

End: 2141763

Strand: Direct

Name: nrfC [H]

Synonym: VSAL_I1999

Alternate gene names: 209695456

Gene position: 2141077-2141763 (Clockwise)

Preceding gene: 209695455

Following gene: 209695457

Centisome position: 64.39

GC content: 43.67

Gene sequence:

>687_bases
ATGAGTTGTTCTAGACGAAATTTTTTAGCGGGCTCGGGTGCGGTTATCTTTACTACCGGAGTCGCAACTACGTCATTAAT
CAGCAGTAAAAAAACGCTGGCTTATTCGATGGAAGATGGTGCAAAACGTTATGGTATGGTCCATGATGAGACGGCTTGTA
TTGGTTGTACTGCCTGTACCGAAGCGTGCCGTGAAGTGAACAGTGTGCCTGAAGGCGTTTCTCGATTAGAGATTATCCGT
AGCGAACCGCGCGGAGAGTTCCCTGATGTCGATTATCGCTTTACGCGTAAGTCATGCCAACACTGTGAAAATGCACCTTG
TGTAATGGTGTGTCCAACAGGCGCTGCTTATAAAGACGAAGCAACTGGTATTGTCGATGTCCATAACGAGAAATGTGTAG
GGTGTGGCTACTGTTTAGCGGCGTGTCCTTATCAAGTACGTTTCTTTAACCCTGTTACTAAATCTGCAGATAAATGTGAT
TTTTGTCGAGAGACGAATTTAGCTCAAGGTAAACAGCCTGCGTGTGTTGAATCGTGTCCAACAAAAGCACTGATCTTTGG
TGACTTGAACGATAAAAACAGTGAGATTAATGCGGTATTAAGCAATAGCGTATTTTATCGAGACAAAGTGGATCTAGGCA
CTAAGCCTAAGTTATTTAAGATCCCAAACCAAAGAGGGGAGATTTAA

Upstream 100 bases:

>100_bases
AAAGAAGCGGTACTTTCTTTTGATCATTCCTCAAAGATAAAGATGTGTGTTGACTGCCACGCTGATTTTAATCAGAAAGA
AAATAAGCTAGGAGAATAGT

Downstream 100 bases:

>100_bases
GATGAGTGCATGGGAAGCTGCGTTTAATTTTGACTCCTTAGTTTGGGATTGGATCATTGCGATCTATCTTTTCTTAGCGG
GTATGTCTGCTGGTGCGGTG

Product: cytochrome C biogenesis protein NrfC

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSCSRRNFLAGSGAVIFTTGVATTSLISSKKTLAYSMEDGAKRYGMVHDETACIGCTACTEACREVNSVPEGVSRLEIIR
SEPRGEFPDVDYRFTRKSCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACPYQVRFFNPVTKSADKCD
FCRETNLAQGKQPACVESCPTKALIFGDLNDKNSEINAVLSNSVFYRDKVDLGTKPKLFKIPNQRGEI

Sequences:

>Translated_228_residues
MSCSRRNFLAGSGAVIFTTGVATTSLISSKKTLAYSMEDGAKRYGMVHDETACIGCTACTEACREVNSVPEGVSRLEIIR
SEPRGEFPDVDYRFTRKSCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACPYQVRFFNPVTKSADKCD
FCRETNLAQGKQPACVESCPTKALIFGDLNDKNSEINAVLSNSVFYRDKVDLGTKPKLFKIPNQRGEI
>Mature_227_residues
SCSRRNFLAGSGAVIFTTGVATTSLISSKKTLAYSMEDGAKRYGMVHDETACIGCTACTEACREVNSVPEGVSRLEIIRS
EPRGEFPDVDYRFTRKSCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACPYQVRFFNPVTKSADKCDF
CRETNLAQGKQPACVESCPTKALIFGDLNDKNSEINAVLSNSVFYRDKVDLGTKPKLFKIPNQRGEI

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=228, Percent_Identity=62.719298245614, Blast_Score=303, Evalue=8e-84,
Organism=Escherichia coli, GI226510944, Length=220, Percent_Identity=47.7272727272727, Blast_Score=210, Evalue=6e-56,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=33.4928229665072, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1790326, Length=171, Percent_Identity=32.1637426900585, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787122, Length=193, Percent_Identity=36.2694300518135, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787749, Length=154, Percent_Identity=33.1168831168831, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1787872, Length=188, Percent_Identity=34.5744680851064, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787740, Length=114, Percent_Identity=34.2105263157895, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789067, Length=160, Percent_Identity=33.75, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787963, Length=202, Percent_Identity=28.7128712871287, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367245, Length=159, Percent_Identity=35.2201257861635, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788811, Length=152, Percent_Identity=34.2105263157895, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787478, Length=104, Percent_Identity=34.6153846153846, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082179, Length=136, Percent_Identity=33.8235294117647, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082180, Length=139, Percent_Identity=35.9712230215827, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789079, Length=180, Percent_Identity=30.5555555555556, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24891; Mature: 24759

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSRRNFLAGSGAVIFTTGVATTSLISSKKTLAYSMEDGAKRYGMVHDETACIGCTACT
CCCCCCCEECCCCCEEEEECCHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCEEEHHHHH
EACREVNSVPEGVSRLEIIRSEPRGEFPDVDYRFTRKSCQHCENAPCVMVCPTGAAYKDE
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
ATGIVDVHNEKCVGCGYCLAACPYQVRFFNPVTKSADKCDFCRETNLAQGKQPACVESCP
CCCEEEECCCCCCCCHHHHHHCCEEEEEECHHHCCCCHHHHHHHCCCCCCCCCCHHHHCC
TKALIFGDLNDKNSEINAVLSNSVFYRDKVDLGTKPKLFKIPNQRGEI
CCEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SCSRRNFLAGSGAVIFTTGVATTSLISSKKTLAYSMEDGAKRYGMVHDETACIGCTACT
CCCCCCEECCCCCEEEEECCHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCEEEHHHHH
EACREVNSVPEGVSRLEIIRSEPRGEFPDVDYRFTRKSCQHCENAPCVMVCPTGAAYKDE
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
ATGIVDVHNEKCVGCGYCLAACPYQVRFFNPVTKSADKCDFCRETNLAQGKQPACVESCP
CCCEEEECCCCCCCCHHHHHHCCEEEEEECHHHCCCCHHHHHHHCCCCCCCCCCHHHHCC
TKALIFGDLNDKNSEINAVLSNSVFYRDKVDLGTKPKLFKIPNQRGEI
CCEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]