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The map label for this gene is cph2 [H]

Identifier: 209695436

GI number: 209695436

Start: 2118542

End: 2120293

Strand: Reverse

Name: cph2 [H]

Synonym: VSAL_I1977

Alternate gene names: 209695436

Gene position: 2120293-2118542 (Counterclockwise)

Preceding gene: 209695437

Following gene: 209695433

Centisome position: 63.77

GC content: 37.9

Gene sequence:

>1752_bases
TTGCATTTACATCAAACAGAACAACAGACGATTAATTTTTGGCAGTCCAATGAAAAAAATACCATCAGTAAAAAATGGCT
ATACTTCCCGATAATTAGCATGGTTATTTCTATGTTTATTGGGCTTTTCGTTTTTAATTCAACACTTTCGGATTGGCTAG
AAAAGAAAGTTGAAGGGGGATTATCAAATGAAATCACAAGAACCATCAAAGACATTAATGAAGACCAAATCTCTTTTGAT
GATCCTGTTCAGCTCGATATCTATTTCAAAACACAAGTTGAAGTAGCAAAAGAAGACCACATTACTCTAATAAAAGAAGA
CGGTACTCCAATTGCGGATAGCGATATTTCTTTAGCCTCTGTGTTAGCACTTGAAAACCATTTAAATCGACAAGAAATTA
TTGATGCCAAAGATGGTTCGTACGGCACAACGACTCGTTTTAGTACCTCTCGCTTTAAAAATTTACTCTATTCAGCAAAA
TCATTTGAATACCAAGGACAAACTTACATTCTTCGAGCGGCAACACCATTAACTCGAATAGATGCCATGGTTGAAGAGTT
AATGAATATTCTCATTGTTTTGATGGGAATTAACATTGTATTGGTTATTGGCTCTTCTTTGTTAAGTAACAAACTGATTC
ATCAACAAGTTAAGAATGAGCAAGACCAACAAGAAGAACGCATCGAACAAAGCACGCAAGAAATTGAATTGCTTCATCGC
CTTGCCAACATGCTTGCTGCTTGTAATTCAATTACTGAAGCTCAAATGGTGGTTGAAGATATTCTTCCTCGTATTTTAGG
CGACGTAAATGGCGTTGTTTCTCTCATCCGCTCATCACGCAATCAATTATTAGTTAAATTGGATTGGGGTGGCTCATGGT
CAGGAAGTAAAACCTATGCTCCTGAAGAGTGCTGGGCATTACGAAAAGGCAAATTCCACCTAGCTAATGATAAATACACC
ACACTTCCTTGTTCACATATGGCCGCCACCGGTACTGATCAAACCCTATGTATCCCATTGATTGCTCATGGTAATACAAT
AGGAATGATGCATATTTATCTTGGTCCAAATAAAGACATTGAAGAAAAAACTCAAAAACTGGCATTTACAGTCGCAGAAC
ATTTGGGTCTTGCACTTGCTAATCTCAACTTACAAGAAAAGCTTCGTGAACAAGCAATCAGTGACCCATTAACAGGGCTA
TATAATCGCCGTTATTATGAAGAAACCATTAATCAAGAATTGATGCGATCTAATCGACACAAACAAGAAATGTCGTTATT
AATGCTCGATTTAGACCATTTTAAACGATTTAATGATAATTACGGGCATGACGCTGGTGATTACGTGCTGAAAACCATTG
GTTCCTTACTGCTTAGTACCATGCGTGGAGAAGATACAATTTGTCGTCTTGGTGGCGAAGAACTCGCGATTATCTTACCC
AATACCAGTGCTGAAGCGGCAACCAAGGTGGCTAACAGCCTATGTCAATCGGTCAGTGATTTACATCTAGCCATCAAAGA
TTTATCTCTTGGCAAGTTAAGCGTCTCTATTGGTATCTCAACTTACCCTGCGAATGGCCTGCAAGCCGATGACTTAACTA
AATTGGCTGATATTGCTCTTTATGAAGCAAAAGGAAGAGGGCGAGATCAATCTTGCCATTATGATGATTTAACCCAAAAC
GCAGAAAGCATCATTGAAAATACAGATAAAAATACGTGTAACAATGAAAATGTGACCGCGATAAAACAGTAA

Upstream 100 bases:

>100_bases
AAACTCTGGTCTGTATTTTGCTTTACAAAAGTATAATGTCAATTTATCTAATACGTTACTAACAAATAACACTATTAAAT
TTAATGGGCATCAGATACTC

Downstream 100 bases:

>100_bases
GTGGACACAATAAAAGAGGTTGATAATTCGGCCTCTTTCATTTCTATTACACCTTAAATATTGGCGACATCCCAAGCACT
TGAGAGTTAAGTAACAGCAA

Product: membrane associated GGDEF protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MHLHQTEQQTINFWQSNEKNTISKKWLYFPIISMVISMFIGLFVFNSTLSDWLEKKVEGGLSNEITRTIKDINEDQISFD
DPVQLDIYFKTQVEVAKEDHITLIKEDGTPIADSDISLASVLALENHLNRQEIIDAKDGSYGTTTRFSTSRFKNLLYSAK
SFEYQGQTYILRAATPLTRIDAMVEELMNILIVLMGINIVLVIGSSLLSNKLIHQQVKNEQDQQEERIEQSTQEIELLHR
LANMLAACNSITEAQMVVEDILPRILGDVNGVVSLIRSSRNQLLVKLDWGGSWSGSKTYAPEECWALRKGKFHLANDKYT
TLPCSHMAATGTDQTLCIPLIAHGNTIGMMHIYLGPNKDIEEKTQKLAFTVAEHLGLALANLNLQEKLREQAISDPLTGL
YNRRYYEETINQELMRSNRHKQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILP
NTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLSVSIGISTYPANGLQADDLTKLADIALYEAKGRGRDQSCHYDDLTQN
AESIIENTDKNTCNNENVTAIKQ

Sequences:

>Translated_583_residues
MHLHQTEQQTINFWQSNEKNTISKKWLYFPIISMVISMFIGLFVFNSTLSDWLEKKVEGGLSNEITRTIKDINEDQISFD
DPVQLDIYFKTQVEVAKEDHITLIKEDGTPIADSDISLASVLALENHLNRQEIIDAKDGSYGTTTRFSTSRFKNLLYSAK
SFEYQGQTYILRAATPLTRIDAMVEELMNILIVLMGINIVLVIGSSLLSNKLIHQQVKNEQDQQEERIEQSTQEIELLHR
LANMLAACNSITEAQMVVEDILPRILGDVNGVVSLIRSSRNQLLVKLDWGGSWSGSKTYAPEECWALRKGKFHLANDKYT
TLPCSHMAATGTDQTLCIPLIAHGNTIGMMHIYLGPNKDIEEKTQKLAFTVAEHLGLALANLNLQEKLREQAISDPLTGL
YNRRYYEETINQELMRSNRHKQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILP
NTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLSVSIGISTYPANGLQADDLTKLADIALYEAKGRGRDQSCHYDDLTQN
AESIIENTDKNTCNNENVTAIKQ
>Mature_583_residues
MHLHQTEQQTINFWQSNEKNTISKKWLYFPIISMVISMFIGLFVFNSTLSDWLEKKVEGGLSNEITRTIKDINEDQISFD
DPVQLDIYFKTQVEVAKEDHITLIKEDGTPIADSDISLASVLALENHLNRQEIIDAKDGSYGTTTRFSTSRFKNLLYSAK
SFEYQGQTYILRAATPLTRIDAMVEELMNILIVLMGINIVLVIGSSLLSNKLIHQQVKNEQDQQEERIEQSTQEIELLHR
LANMLAACNSITEAQMVVEDILPRILGDVNGVVSLIRSSRNQLLVKLDWGGSWSGSKTYAPEECWALRKGKFHLANDKYT
TLPCSHMAATGTDQTLCIPLIAHGNTIGMMHIYLGPNKDIEEKTQKLAFTVAEHLGLALANLNLQEKLREQAISDPLTGL
YNRRYYEETINQELMRSNRHKQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILP
NTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLSVSIGISTYPANGLQADDLTKLADIALYEAKGRGRDQSCHYDDLTQN
AESIIENTDKNTCNNENVTAIKQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=35.3932584269663, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=36.2068965517241, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1787262, Length=157, Percent_Identity=33.1210191082803, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=37.125748502994, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=31.7365269461078, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=36.1963190184049, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=33.7349397590361, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=31.9526627218935, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081974, Length=116, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65451; Mature: 65451

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLHQTEQQTINFWQSNEKNTISKKWLYFPIISMVISMFIGLFVFNSTLSDWLEKKVEGG
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSNEITRTIKDINEDQISFDDPVQLDIYFKTQVEVAKEDHITLIKEDGTPIADSDISLAS
CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHH
VLALENHLNRQEIIDAKDGSYGTTTRFSTSRFKNLLYSAKSFEYQGQTYILRAATPLTRI
HHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
DAMVEELMNILIVLMGINIVLVIGSSLLSNKLIHQQVKNEQDQQEERIEQSTQEIELLHR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LANMLAACNSITEAQMVVEDILPRILGDVNGVVSLIRSSRNQLLVKLDWGGSWSGSKTYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
PEECWALRKGKFHLANDKYTTLPCSHMAATGTDQTLCIPLIAHGNTIGMMHIYLGPNKDI
CHHHHHHHCCCEEECCCCEEECCCHHHHCCCCCCEEEEEEEECCCEEEEEEEEECCCCCH
EEKTQKLAFTVAEHLGLALANLNLQEKLREQAISDPLTGLYNRRYYEETINQELMRSNRH
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCH
KQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILP
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEC
NTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLSVSIGISTYPANGLQADDLTKLADIAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
YEAKGRGRDQSCHYDDLTQNAESIIENTDKNTCNNENVTAIKQ
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MHLHQTEQQTINFWQSNEKNTISKKWLYFPIISMVISMFIGLFVFNSTLSDWLEKKVEGG
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSNEITRTIKDINEDQISFDDPVQLDIYFKTQVEVAKEDHITLIKEDGTPIADSDISLAS
CHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHH
VLALENHLNRQEIIDAKDGSYGTTTRFSTSRFKNLLYSAKSFEYQGQTYILRAATPLTRI
HHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
DAMVEELMNILIVLMGINIVLVIGSSLLSNKLIHQQVKNEQDQQEERIEQSTQEIELLHR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
LANMLAACNSITEAQMVVEDILPRILGDVNGVVSLIRSSRNQLLVKLDWGGSWSGSKTYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
PEECWALRKGKFHLANDKYTTLPCSHMAATGTDQTLCIPLIAHGNTIGMMHIYLGPNKDI
CHHHHHHHCCCEEECCCCEEECCCHHHHCCCCCCEEEEEEEECCCEEEEEEEEECCCCCH
EEKTQKLAFTVAEHLGLALANLNLQEKLREQAISDPLTGLYNRRYYEETINQELMRSNRH
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCH
KQEMSLLMLDLDHFKRFNDNYGHDAGDYVLKTIGSLLLSTMRGEDTICRLGGEELAIILP
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEC
NTSAEAATKVANSLCQSVSDLHLAIKDLSLGKLSVSIGISTYPANGLQADDLTKLADIAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
YEAKGRGRDQSCHYDDLTQNAESIIENTDKNTCNNENVTAIKQ
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]