| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695348
Identifier: 209695348
GI number: 209695348
Start: 2015333
End: 2016298
Strand: Reverse
Name: 209695348
Synonym: VSAL_I1881
Alternate gene names: NA
Gene position: 2016298-2015333 (Counterclockwise)
Preceding gene: 209695349
Following gene: 209695343
Centisome position: 60.64
GC content: 41.2
Gene sequence:
>966_bases ATGTTTAGTAGATTCACGTCTCCTTCAAAACTAAAAGCAAAAGGGATCATGGGCATGAATCAACGTAATGGCAGTTATAT CGGCCGTTACAATGGTCGAAGCAAATACCCATTAGTTGATGATAAGTTAAAAACAAAAGTGATTGCGGTAAAAGCAGGCG CTACGGTTCCTAAACTTATTGGTGTAATCGATAGCCAAGCTGAAGTGAAGAACATTCACGATATCGTTAAAGATTGGCCT GGTTTTGTTATCAAACCAGCCCAAGGCAGTGGCGGTAAGGGCATTTTAGTTGTTACTTCTCATAAAGATGGCGTGTATTA CAAACCATCTGGAGCAGAGGCAAACAAGCAAGATGTAGAGCGACATATTACCAATACACTTGCAGGTCTTTTTTCTCTTA GTGGAAAAAACGATGTTGCGATGATCGAGAACTTAATCGAGTTTGATGATGTGTTTGACGGTTTCAGTTATGAAGGAGTG CCAGATGTACGTATTATCGTATTTAAAGGCTACCCTGTAATGGCGATGATGCGTTTATCAACAACAAACTCCGATGGAAA AGCCAACTTGCACCAAGGTGCTGTTGGTGTGGGTATCGATATAGGGACAGGAAAAGCCGTACGCGCCGTACAATTTGATT TACCTGTAGAGAACCATCCTGATACGGGTAAATTATTAAGTACGCTAGAAGTCCCTCATTGGCATAAACTATTAACCCTT GCATCTAGTGCGTGGGAAATGACCGGATTAGGTTATCTGGGTACTGATATGGTACTCGATAAAAAATACGGACCAATGGT TCTAGAACTTAATGCTCGTCCAGGCTTAGCGATTCAAATTGCAAACGGAACAGGGTTACTCCCTCGTTTAAAGCATATTG AAAGCTTGGAAGAAACCATTCCCTACCCAACTCCAGAAGCTCGTGTTGCTTATGCAATGGAACAGTTTGGTATTTATAAT AAATAG
Upstream 100 bases:
>100_bases TCAGCTAATTATTTTAGCCATTATACTGATGCTTGGTAATTATACTGGTTACCGTTTAAGTGAGCTTCGTCGCTTTAAGC CTTTAGCGGAGGACTAACCT
Downstream 100 bases:
>100_bases CTGACCTGTAGAATACATAAAACTAAAAAAGGGAAGAAAGCTTATGCTCTCTTCCCTTTTTATTTATATAAACATCAGCT AATTCGGTCTATTTTTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha-L-Glutamate Ligase; Alpha-L-Glutamate Ligase-Related Protein; Alpha-L-Glutamate Ligase Family Protein; Glutathione Synthase/Ribosomal; Glutathione Synthase/Ribosomal Protein; Ketopantoate Hydroxymethyltransferase; Glutathione Synthase/Ribosomal Glutaminyl Transferase; Alpha-L-Glutamate Ligase Homolog
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MFSRFTSPSKLKAKGIMGMNQRNGSYIGRYNGRSKYPLVDDKLKTKVIAVKAGATVPKLIGVIDSQAEVKNIHDIVKDWP GFVIKPAQGSGGKGILVVTSHKDGVYYKPSGAEANKQDVERHITNTLAGLFSLSGKNDVAMIENLIEFDDVFDGFSYEGV PDVRIIVFKGYPVMAMMRLSTTNSDGKANLHQGAVGVGIDIGTGKAVRAVQFDLPVENHPDTGKLLSTLEVPHWHKLLTL ASSAWEMTGLGYLGTDMVLDKKYGPMVLELNARPGLAIQIANGTGLLPRLKHIESLEETIPYPTPEARVAYAMEQFGIYN K
Sequences:
>Translated_321_residues MFSRFTSPSKLKAKGIMGMNQRNGSYIGRYNGRSKYPLVDDKLKTKVIAVKAGATVPKLIGVIDSQAEVKNIHDIVKDWP GFVIKPAQGSGGKGILVVTSHKDGVYYKPSGAEANKQDVERHITNTLAGLFSLSGKNDVAMIENLIEFDDVFDGFSYEGV PDVRIIVFKGYPVMAMMRLSTTNSDGKANLHQGAVGVGIDIGTGKAVRAVQFDLPVENHPDTGKLLSTLEVPHWHKLLTL ASSAWEMTGLGYLGTDMVLDKKYGPMVLELNARPGLAIQIANGTGLLPRLKHIESLEETIPYPTPEARVAYAMEQFGIYN K >Mature_321_residues MFSRFTSPSKLKAKGIMGMNQRNGSYIGRYNGRSKYPLVDDKLKTKVIAVKAGATVPKLIGVIDSQAEVKNIHDIVKDWP GFVIKPAQGSGGKGILVVTSHKDGVYYKPSGAEANKQDVERHITNTLAGLFSLSGKNDVAMIENLIEFDDVFDGFSYEGV PDVRIIVFKGYPVMAMMRLSTTNSDGKANLHQGAVGVGIDIGTGKAVRAVQFDLPVENHPDTGKLLSTLEVPHWHKLLTL ASSAWEMTGLGYLGTDMVLDKKYGPMVLELNARPGLAIQIANGTGLLPRLKHIESLEETIPYPTPEARVAYAMEQFGIYN K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34962; Mature: 34962
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSRFTSPSKLKAKGIMGMNQRNGSYIGRYNGRSKYPLVDDKLKTKVIAVKAGATVPKLI CCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHH GVIDSQAEVKNIHDIVKDWPGFVIKPAQGSGGKGILVVTSHKDGVYYKPSGAEANKQDVE HHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCCHHHHH RHITNTLAGLFSLSGKNDVAMIENLIEFDDVFDGFSYEGVPDVRIIVFKGYPVMAMMRLS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEE TTNSDGKANLHQGAVGVGIDIGTGKAVRAVQFDLPVENHPDTGKLLSTLEVPHWHKLLTL CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH ASSAWEMTGLGYLGTDMVLDKKYGPMVLELNARPGLAIQIANGTGLLPRLKHIESLEETI HHCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHC PYPTPEARVAYAMEQFGIYNK CCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MFSRFTSPSKLKAKGIMGMNQRNGSYIGRYNGRSKYPLVDDKLKTKVIAVKAGATVPKLI CCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHH GVIDSQAEVKNIHDIVKDWPGFVIKPAQGSGGKGILVVTSHKDGVYYKPSGAEANKQDVE HHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCCHHHHH RHITNTLAGLFSLSGKNDVAMIENLIEFDDVFDGFSYEGVPDVRIIVFKGYPVMAMMRLS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEEE TTNSDGKANLHQGAVGVGIDIGTGKAVRAVQFDLPVENHPDTGKLLSTLEVPHWHKLLTL CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHH ASSAWEMTGLGYLGTDMVLDKKYGPMVLELNARPGLAIQIANGTGLLPRLKHIESLEETI HHCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHC PYPTPEARVAYAMEQFGIYNK CCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA