Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695279

Identifier: 209695279

GI number: 209695279

Start: 1927204

End: 1928316

Strand: Reverse

Name: 209695279

Synonym: VSAL_I1804

Alternate gene names: NA

Gene position: 1928316-1927204 (Counterclockwise)

Preceding gene: 209695280

Following gene: 209695278

Centisome position: 57.99

GC content: 37.92

Gene sequence:

>1113_bases
TTGTATCATCAACTTTTAGATTTTTTGTACGTAATATGCCAAAGGCGCCTGTCTTCTGGGCGCTATTTAATGATGTCTTC
GTTACGCCTAGTATTCCTAACAATCGGAGTTTCTTTTGTCGTCAACGTTGTTTATGGGGACTTTAATGTTGTTATTGACC
CTCAAAGCTCTTCGATTGCGAGTGTGCTATCGAATCTTGGTTATATTTTGGGAATTCTGATGTTTGCCGTGGGTTGCTTT
ATTGAGATTTATGAACGCGTCAAAGGCGAAGCGTCTAGCTCAAAAAGAGCCAAAAGTATTGACTTTCGCACATTGACGAA
CAGCCACGCACCGAAATTATGCGATCAATTTGAAACAACAATAGATCAAGCCGGTTTACATGATGACCTTTACATAGAAC
AAAAATTTCAAGAATCGCGTACTAATTGGCTTGCTGCTACATGTGAGCGTTTGAATAATTTCAAGGTAGGTAAGCTTTTT
ACTATGAACAGACATGAACCAATGAAACCTTTAGCTTTAGGTTCGTTAGCTCATGTCCCGCACTGTTTTACCTTAGGTTT
CCTAGTTGGAAACCGTAGACTCGTAAATTATTATTGTTGGAACAGAGATAATAGTCGCCCTCAAAAAAGCAGATGGATAG
ATACGCGTGACGCTAGAGATCGTGGTGTTCGCTTAAAAGATGAAATCACTCTGACTTTAAAAGATGGTCAAGTTGCAAGC
GATGTAATCAAGTGGGGATTATCTATAGAGATATCTTTTGATAATGACGACGTTAATTTTATGAATGACGTTGACTTAGA
TGCGGTTTCAAAATTAGAGCTCGAAAACAAGAATGTAGGCAACTTGTTTTCTGAAGTTGCACAAGTCGCAATTGTTTCAA
GTATCAGAAATTATATCAATACAACAATTTCCTCTTTTCCTAACCTCAAAGAAATTCATTTAACTGTTACGGGACAGGCA
TCTTTCATCATGAGACTTGGAGCTGAGTTCGACCAAAACCATTTTCAATACGTAAAAAAAATTCACCACTTTGAACGAAA
TTCTCAAAATTATCCTTGGTGTCTAGTACTAGATCCTACTAGCGAGTTACCTGTGCAATTTGAAGAGCGATAA

Upstream 100 bases:

>100_bases
ATTAAGTGAGCAGATAATTATATGTTCACTTATTCAAAAGATATATTATCTATAGACTTACAATTAGTAAGTTTATAAAT
TCAATTTGTAGGAGTCTCCC

Downstream 100 bases:

>100_bases
CCCATGAAGCATATTAAAGCGTTTCATCACTTGTTGACTGATGTAGTCAACCTCAATCAGACAAGACTTTCCAAACTTGA
AACTGCGGTTCCAACAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MYHQLLDFLYVICQRRLSSGRYLMMSSLRLVFLTIGVSFVVNVVYGDFNVVIDPQSSSIASVLSNLGYILGILMFAVGCF
IEIYERVKGEASSSKRAKSIDFRTLTNSHAPKLCDQFETTIDQAGLHDDLYIEQKFQESRTNWLAATCERLNNFKVGKLF
TMNRHEPMKPLALGSLAHVPHCFTLGFLVGNRRLVNYYCWNRDNSRPQKSRWIDTRDARDRGVRLKDEITLTLKDGQVAS
DVIKWGLSIEISFDNDDVNFMNDVDLDAVSKLELENKNVGNLFSEVAQVAIVSSIRNYINTTISSFPNLKEIHLTVTGQA
SFIMRLGAEFDQNHFQYVKKIHHFERNSQNYPWCLVLDPTSELPVQFEER

Sequences:

>Translated_370_residues
MYHQLLDFLYVICQRRLSSGRYLMMSSLRLVFLTIGVSFVVNVVYGDFNVVIDPQSSSIASVLSNLGYILGILMFAVGCF
IEIYERVKGEASSSKRAKSIDFRTLTNSHAPKLCDQFETTIDQAGLHDDLYIEQKFQESRTNWLAATCERLNNFKVGKLF
TMNRHEPMKPLALGSLAHVPHCFTLGFLVGNRRLVNYYCWNRDNSRPQKSRWIDTRDARDRGVRLKDEITLTLKDGQVAS
DVIKWGLSIEISFDNDDVNFMNDVDLDAVSKLELENKNVGNLFSEVAQVAIVSSIRNYINTTISSFPNLKEIHLTVTGQA
SFIMRLGAEFDQNHFQYVKKIHHFERNSQNYPWCLVLDPTSELPVQFEER
>Mature_370_residues
MYHQLLDFLYVICQRRLSSGRYLMMSSLRLVFLTIGVSFVVNVVYGDFNVVIDPQSSSIASVLSNLGYILGILMFAVGCF
IEIYERVKGEASSSKRAKSIDFRTLTNSHAPKLCDQFETTIDQAGLHDDLYIEQKFQESRTNWLAATCERLNNFKVGKLF
TMNRHEPMKPLALGSLAHVPHCFTLGFLVGNRRLVNYYCWNRDNSRPQKSRWIDTRDARDRGVRLKDEITLTLKDGQVAS
DVIKWGLSIEISFDNDDVNFMNDVDLDAVSKLELENKNVGNLFSEVAQVAIVSSIRNYINTTISSFPNLKEIHLTVTGQA
SFIMRLGAEFDQNHFQYVKKIHHFERNSQNYPWCLVLDPTSELPVQFEER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42435; Mature: 42435

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHQLLDFLYVICQRRLSSGRYLMMSSLRLVFLTIGVSFVVNVVYGDFNVVIDPQSSSIA
CHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCHHHH
SVLSNLGYILGILMFAVGCFIEIYERVKGEASSSKRAKSIDFRTLTNSHAPKLCDQFETT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHHH
IDQAGLHDDLYIEQKFQESRTNWLAATCERLNNFKVGKLFTMNRHEPMKPLALGSLAHVP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHCHHHHCC
HCFTLGFLVGNRRLVNYYCWNRDNSRPQKSRWIDTRDARDRGVRLKDEITLTLKDGQVAS
HHHHHHHHHCCCEEEEEEEECCCCCCCHHHHCCCCCCHHHCCCEEECEEEEEEECCCHHH
DVIKWGLSIEISFDNDDVNFMNDVDLDAVSKLELENKNVGNLFSEVAQVAIVSSIRNYIN
HHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TTISSFPNLKEIHLTVTGQASFIMRLGAEFDQNHFQYVKKIHHFERNSQNYPWCLVLDPT
HHHHCCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SELPVQFEER
CCCCEEECCC
>Mature Secondary Structure
MYHQLLDFLYVICQRRLSSGRYLMMSSLRLVFLTIGVSFVVNVVYGDFNVVIDPQSSSIA
CHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCHHHH
SVLSNLGYILGILMFAVGCFIEIYERVKGEASSSKRAKSIDFRTLTNSHAPKLCDQFETT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHHH
IDQAGLHDDLYIEQKFQESRTNWLAATCERLNNFKVGKLFTMNRHEPMKPLALGSLAHVP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHCHHHHCC
HCFTLGFLVGNRRLVNYYCWNRDNSRPQKSRWIDTRDARDRGVRLKDEITLTLKDGQVAS
HHHHHHHHHCCCEEEEEEEECCCCCCCHHHHCCCCCCHHHCCCEEECEEEEEEECCCHHH
DVIKWGLSIEISFDNDDVNFMNDVDLDAVSKLELENKNVGNLFSEVAQVAIVSSIRNYIN
HHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TTISSFPNLKEIHLTVTGQASFIMRLGAEFDQNHFQYVKKIHHFERNSQNYPWCLVLDPT
HHHHCCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SELPVQFEER
CCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA