Click here to switch to the map view.

The map label for this gene is ompA [C]

Identifier: 209695192

GI number: 209695192

Start: 1794854

End: 1795387

Strand: Reverse

Name: ompA [C]

Synonym: VSAL_I1699

Alternate gene names: 209695192

Gene position: 1795387-1794854 (Counterclockwise)

Preceding gene: 209695193

Following gene: 209695190

Centisome position: 53.99

GC content: 41.2

Gene sequence:

>534_bases
ATGATTAATATTAAAAAGAGCGGCAAAGATTGCCGCTCCCTTTTGAAAATAGGATTGAAAATGAAAAAGACACTTTTAGC
GTTAGTTCTAGCGAGCGTTTCTACAACAGCGGCTGCTGATTCTTGGATTTACGCTGGTGCACAAGTGGGTTCAGCTGATT
ACAGAGGCGAAAGTTCAACAGTATACGGTGCGCACGTTGGTACTGGTATTTTGCCTTTCATCGGTGTTGAAATGGGTGCT
TGGAACCTAGGTTCTTACGATTACGGTAGTCAATCAACAGATGTAACGTCTGTAAACTTTGCAATTAAGCCAAGTATCGA
TTTCGGTCCTTTACATGTTTACGGTAAAGCAGGCATGCACAGCTGGGAAGCTGATGGTTACCGTAAAGATGATGGTGTTG
ATCCATTCTTTGGTTTAGGTGTTGAATACAATATCTTCCCAATGTTCACTGTTGGTGCTGGTTATAACAACTTCACAGTA
GGTGACGAAAACATTGATTTCGCTTCACTTAACCTAACGGTTCATTTCCTATAA

Upstream 100 bases:

>100_bases
ACACCATACCCTGTTTCGGACAAACGAGTGAAAAACGCCATTGCTGATTGTTAGTGTATAGAATAATATATAACAATATC
GGCATACAATTTGCTTTAGT

Downstream 100 bases:

>100_bases
TAACAACATTGTTTGTTTTTATTTGAAATAGAGAGATACAAAAATGGCGACCAATGCGGTCGCCATTTTTATTAGTAATC
AATAGAATAGTTAGTTACGA

Product: outer membrane protein, OmpA-like

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MINIKKSGKDCRSLLKIGLKMKKTLLALVLASVSTTAAADSWIYAGAQVGSADYRGESSTVYGAHVGTGILPFIGVEMGA
WNLGSYDYGSQSTDVTSVNFAIKPSIDFGPLHVYGKAGMHSWEADGYRKDDGVDPFFGLGVEYNIFPMFTVGAGYNNFTV
GDENIDFASLNLTVHFL

Sequences:

>Translated_177_residues
MINIKKSGKDCRSLLKIGLKMKKTLLALVLASVSTTAAADSWIYAGAQVGSADYRGESSTVYGAHVGTGILPFIGVEMGA
WNLGSYDYGSQSTDVTSVNFAIKPSIDFGPLHVYGKAGMHSWEADGYRKDDGVDPFFGLGVEYNIFPMFTVGAGYNNFTV
GDENIDFASLNLTVHFL
>Mature_177_residues
MINIKKSGKDCRSLLKIGLKMKKTLLALVLASVSTTAAADSWIYAGAQVGSADYRGESSTVYGAHVGTGILPFIGVEMGA
WNLGSYDYGSQSTDVTSVNFAIKPSIDFGPLHVYGKAGMHSWEADGYRKDDGVDPFFGLGVEYNIFPMFTVGAGYNNFTV
GDENIDFASLNLTVHFL

Specific function: Required For The Action Of Colicins K And L And For The Stabilization Of Mating Aggregates In Conjugation. Serves As A Receptor For A Number Of T-Even Like Phages. Also Acts As A Porin With Low Permeability That Allows Slow Penetration Of Small Solutes.

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18999; Mature: 18999

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIKKSGKDCRSLLKIGLKMKKTLLALVLASVSTTAAADSWIYAGAQVGSADYRGESST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCE
VYGAHVGTGILPFIGVEMGAWNLGSYDYGSQSTDVTSVNFAIKPSIDFGPLHVYGKAGMH
EEECCCCCCCHHHHEEECCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCC
SWEADGYRKDDGVDPFFGLGVEYNIFPMFTVGAGYNNFTVGDENIDFASLNLTVHFL
CCCCCCEECCCCCCCEEECCEEEEEEEEEEECCCCCCCEECCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MINIKKSGKDCRSLLKIGLKMKKTLLALVLASVSTTAAADSWIYAGAQVGSADYRGESST
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCE
VYGAHVGTGILPFIGVEMGAWNLGSYDYGSQSTDVTSVNFAIKPSIDFGPLHVYGKAGMH
EEECCCCCCCHHHHEEECCCEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCC
SWEADGYRKDDGVDPFFGLGVEYNIFPMFTVGAGYNNFTVGDENIDFASLNLTVHFL
CCCCCCEECCCCCCCEEECCEEEEEEEEEEECCCCCCCEECCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA