| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695095
Identifier: 209695095
GI number: 209695095
Start: 1701252
End: 1701584
Strand: Reverse
Name: 209695095
Synonym: VSAL_I1592
Alternate gene names: NA
Gene position: 1701584-1701252 (Counterclockwise)
Preceding gene: 209695096
Following gene: 209695094
Centisome position: 51.17
GC content: 35.74
Gene sequence:
>333_bases TTGTCCTATATAGGAATTAGCCCAAAAAGAAGCATTAAAATGAAAGAATTAAAAACCCTCGCCATCCAGTTGTTAGAATG GAATAAAGAAAACTTAAAGGCATCAACCACTCTTTTTGAATCCGATCTTGCCACTTGTTTTGCCGATGAGTTTGTAGTTA AAGCCAATGGTCTTGAATACAAAGCAAATCACCATTCATATTTAGAGTTTTTAAATGGGTTTAAAGCAAACATTGAGTCT ATTTGCTATAAAGTACAAGAGTACCTTTGTGATGCAGATAAAGTGGTTACGGTGATGTCGGCTAAAGTGCGTCGAATAGA TGGAAGCGTTTGA
Upstream 100 bases:
>100_bases TGGCTTTGATTCTATTTTAGAGGCTATCCGCACGGTAAAGTCGTTATCTTAAAGCGGTTTATTTTTTAATGTATTTTTTT GGAACATAAACCCAATAGGT
Downstream 100 bases:
>100_bases AGCGATGTTACTGCTTAAATTTGATGAAAATGATTTAATTACATTGTGGCAAGAAGTGTACGCAAAGAAAATTTAATCGT GACAATGTATGCGTTCGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MSYIGISPKRSIKMKELKTLAIQLLEWNKENLKASTTLFESDLATCFADEFVVKANGLEYKANHHSYLEFLNGFKANIES ICYKVQEYLCDADKVVTVMSAKVRRIDGSV
Sequences:
>Translated_110_residues MSYIGISPKRSIKMKELKTLAIQLLEWNKENLKASTTLFESDLATCFADEFVVKANGLEYKANHHSYLEFLNGFKANIES ICYKVQEYLCDADKVVTVMSAKVRRIDGSV >Mature_109_residues SYIGISPKRSIKMKELKTLAIQLLEWNKENLKASTTLFESDLATCFADEFVVKANGLEYKANHHSYLEFLNGFKANIESI CYKVQEYLCDADKVVTVMSAKVRRIDGSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12503; Mature: 12371
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYIGISPKRSIKMKELKTLAIQLLEWNKENLKASTTLFESDLATCFADEFVVKANGLEY CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEE KANHHSYLEFLNGFKANIESICYKVQEYLCDADKVVTVMSAKVRRIDGSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SYIGISPKRSIKMKELKTLAIQLLEWNKENLKASTTLFESDLATCFADEFVVKANGLEY CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEE KANHHSYLEFLNGFKANIESICYKVQEYLCDADKVVTVMSAKVRRIDGSV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA