| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694949
Identifier: 209694949
GI number: 209694949
Start: 1540076
End: 1540750
Strand: Reverse
Name: 209694949
Synonym: VSAL_I1428
Alternate gene names: NA
Gene position: 1540750-1540076 (Counterclockwise)
Preceding gene: 209694950
Following gene: 209694948
Centisome position: 46.34
GC content: 39.26
Gene sequence:
>675_bases ATGACATCACCCATTCTTTACTCATTACGACAATGTCCTTACGCTATGCGTGCTCGCCTTGGGATAATACACGCACATCA AATTGTCTTGCTTCGTGACGTCGATATGAATAATAAACCCGAAGAAATGCTGTCTATTTCACCGAAGGGGACAGTGCCAG TATTGCTGCTAGAAAATGGCTCTGTCATTGATGAAAGCATTGATGTGATGATATGGGCGCTCAACCAATCAGATCCTAAT AATCTACTGTATTCACACGATAAAGCTCTATTGCCTGTGATGCTTGAGTTAATTAACCGCAGTGACACTGAATTTGTGAA TGCCTTACAGAAGTACCGAGCCGCTTCTCGTTATCATGATGATAATGAAACAGCATGCCGTGATATGTGTTGCGGATGGT TAATGGAAATTGAACAGCGTTTATCTCAACATGCTTACATTATGGGAGAAAAACCAAGTTTAGTTGATTACTCTATTTTG CCATTTATTCGCCAATTTTCACGAGTAGATAAAAAATGGTATGCACAAGCGCCCTTGCCTTATTTACGTGCGTGGTTAGT AAACCATTATAATGACCCCCTATTTTCTAAAGTAATGATGACCTACCCAAAATGGAAAAATAATGATGACTCCATTTTAT TTGGTGATGTCCACTCTCGTAAAAAACAACGTTAA
Upstream 100 bases:
>100_bases CTTAGGCTTTTATTGATCTAGATCATGACTTTTTATTCGTGAATATCTTCGTTCTATTCGATAATATACCCATAAGGCTT TCTATTTTAGGCATTTAACC
Downstream 100 bases:
>100_bases TAACCTACATTCCGCTTTACCATAAAAAACCAAAGGTGCGTTCATAAACCCAAAAACTCGCTAAACTGCCAATACTGTAG GCAATAACGACGGTGCCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Glutathione S-Transferase; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase N Terminus; Glutathione S-Transferase N-Terminal Domain; Glutaredoxin; Glutathione-S-Transferase Domain-Containing Protein; Rhodanese Domain Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase Family Protein; Glutathione S-Transferase C-Terminal-Like Domain; Glutathione S-Transferase Domain; Glutathione-S-Transferase Domain Protein; Glutathione S-Transferase Omega Class; Rhodanese Domain-Containing Protein; Glutathione S-Transferase N-Terminal Domain Protein; Stringent Starvation Protein A; Glutathione S-Transferase N Terminal Domain Protein; GSH-Dependent Dehydroascorbate Reductase; Glutathione S-Transferase C-Terminal Domain Protein
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTSPILYSLRQCPYAMRARLGIIHAHQIVLLRDVDMNNKPEEMLSISPKGTVPVLLLENGSVIDESIDVMIWALNQSDPN NLLYSHDKALLPVMLELINRSDTEFVNALQKYRAASRYHDDNETACRDMCCGWLMEIEQRLSQHAYIMGEKPSLVDYSIL PFIRQFSRVDKKWYAQAPLPYLRAWLVNHYNDPLFSKVMMTYPKWKNNDDSILFGDVHSRKKQR
Sequences:
>Translated_224_residues MTSPILYSLRQCPYAMRARLGIIHAHQIVLLRDVDMNNKPEEMLSISPKGTVPVLLLENGSVIDESIDVMIWALNQSDPN NLLYSHDKALLPVMLELINRSDTEFVNALQKYRAASRYHDDNETACRDMCCGWLMEIEQRLSQHAYIMGEKPSLVDYSIL PFIRQFSRVDKKWYAQAPLPYLRAWLVNHYNDPLFSKVMMTYPKWKNNDDSILFGDVHSRKKQR >Mature_223_residues TSPILYSLRQCPYAMRARLGIIHAHQIVLLRDVDMNNKPEEMLSISPKGTVPVLLLENGSVIDESIDVMIWALNQSDPNN LLYSHDKALLPVMLELINRSDTEFVNALQKYRAASRYHDDNETACRDMCCGWLMEIEQRLSQHAYIMGEKPSLVDYSILP FIRQFSRVDKKWYAQAPLPYLRAWLVNHYNDPLFSKVMMTYPKWKNNDDSILFGDVHSRKKQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26120; Mature: 25988
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPILYSLRQCPYAMRARLGIIHAHQIVLLRDVDMNNKPEEMLSISPKGTVPVLLLENG CCCHHHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHEECCCCCCEEEEEECCC SVIDESIDVMIWALNQSDPNNLLYSHDKALLPVMLELINRSDTEFVNALQKYRAASRYHD CCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC DNETACRDMCCGWLMEIEQRLSQHAYIMGEKPSLVDYSILPFIRQFSRVDKKWYAQAPLP CCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH YLRAWLVNHYNDPLFSKVMMTYPKWKNNDDSILFGDVHSRKKQR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHCCCC >Mature Secondary Structure TSPILYSLRQCPYAMRARLGIIHAHQIVLLRDVDMNNKPEEMLSISPKGTVPVLLLENG CCHHHHHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHEECCCCCCEEEEEECCC SVIDESIDVMIWALNQSDPNNLLYSHDKALLPVMLELINRSDTEFVNALQKYRAASRYHD CCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC DNETACRDMCCGWLMEIEQRLSQHAYIMGEKPSLVDYSILPFIRQFSRVDKKWYAQAPLP CCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH YLRAWLVNHYNDPLFSKVMMTYPKWKNNDDSILFGDVHSRKKQR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA