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The map label for this gene is rbsD

Identifier: 209694899

GI number: 209694899

Start: 1493673

End: 1494092

Strand: Reverse

Name: rbsD

Synonym: VSAL_I1372

Alternate gene names: 209694899

Gene position: 1494092-1493673 (Counterclockwise)

Preceding gene: 209694905

Following gene: 209694898

Centisome position: 44.93

GC content: 38.57

Gene sequence:

>420_bases
ATGAAGAAAAACACACTATTAAATGCTGAATTATCGTACATAATTGCCTCTCTAGGCCATACCGATGAAATTACAATTTG
TGATGCTGGCTTACCTATTCCAGACAGATCACAACGAATCGATTTAGCGTTAATTCAGGGGATACCAACCTTCATTGATA
CCGTAAAAGCAACGCTTGCTGAGATGCAAATTGAAGGCGTAATTGTTGCCCAAGAATTCAAAACCGTTAGCCCACAATTG
CATGATGAGCTAATGACTCTTGTCCAAATCGAAGAAGAATTACGCGGTAAACCAATCACGATTTCTTATATCCCTCACGA
AGAATTCAAATCACATTCTCACCAGAGTAAAGCGATAGTTCGTACTGGTGAATGCACTCCTTACGCGAATGTTATTTTTC
AATCTGGAGTTGTTTTTTAA

Upstream 100 bases:

>100_bases
TTTATTGCTCTAAATTCACCATCGAAACGTTTACGCAAACGTTTCGATGAGTATAAAACACGCAGTAAATGCTCATCAAT
TATTAATCAAGGGTATTCTC

Downstream 100 bases:

>100_bases
GTCACCCTAGTGTCGATGATTAAGCAACTTACACAGTAGTAAATAATGAAAGGATCACTCATGAATCAACCCATTCTCGA
ACTAAAAGGGATTGAAAAAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKNTLLNAELSYIIASLGHTDEITICDAGLPIPDRSQRIDLALIQGIPTFIDTVKATLAEMQIEGVIVAQEFKTVSPQL
HDELMTLVQIEEELRGKPITISYIPHEEFKSHSHQSKAIVRTGECTPYANVIFQSGVVF

Sequences:

>Translated_139_residues
MKKNTLLNAELSYIIASLGHTDEITICDAGLPIPDRSQRIDLALIQGIPTFIDTVKATLAEMQIEGVIVAQEFKTVSPQL
HDELMTLVQIEEELRGKPITISYIPHEEFKSHSHQSKAIVRTGECTPYANVIFQSGVVF
>Mature_139_residues
MKKNTLLNAELSYIIASLGHTDEITICDAGLPIPDRSQRIDLALIQGIPTFIDTVKATLAEMQIEGVIVAQEFKTVSPQL
HDELMTLVQIEEELRGKPITISYIPHEEFKSHSHQSKAIVRTGECTPYANVIFQSGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=47.4820143884892, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_ALISL (B6EKH2)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262827.1
- ProteinModelPortal:   B6EKH2
- GeneID:   6989067
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1372
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15447; Mature: 15447

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNTLLNAELSYIIASLGHTDEITICDAGLPIPDRSQRIDLALIQGIPTFIDTVKATLA
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHH
EMQIEGVIVAQEFKTVSPQLHDELMTLVQIEEELRGKPITISYIPHEEFKSHSHQSKAIV
HHHHCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCEEE
RTGECTPYANVIFQSGVVF
ECCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKKNTLLNAELSYIIASLGHTDEITICDAGLPIPDRSQRIDLALIQGIPTFIDTVKATLA
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCHHHHHHHHHHHH
EMQIEGVIVAQEFKTVSPQLHDELMTLVQIEEELRGKPITISYIPHEEFKSHSHQSKAIV
HHHHCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCEEE
RTGECTPYANVIFQSGVVF
ECCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA