Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694871

Identifier: 209694871

GI number: 209694871

Start: 1456867

End: 1457409

Strand: Reverse

Name: 209694871

Synonym: VSAL_I1342

Alternate gene names: NA

Gene position: 1457409-1456867 (Counterclockwise)

Preceding gene: 209694872

Following gene: 209694866

Centisome position: 43.83

GC content: 39.59

Gene sequence:

>543_bases
ATGAATAAGAAAAAACATACCCTATCTCCTAGAGCACAAGAATTAAGAGCTGAATGGACTGGAATGAAAAGTGATCATCG
CTTTATTTCTCATTCATTCAACTGCGTGAAAGTTCATATCCATACACCTGATGATGGAATGTATAACCGTTCTGTCGGCT
GTTTAAAGCAAGGGCGAGATAAAGCCCTTAAAGAGGCGCTAAAACAACGTAACCAAGTTGGTCGAGAACTCTGGGGCAGC
TGTTGGAATGCGGTTTTAAATACACAGAGTCTATTTGAACGCTTACCACACAGCCTAGAACCTGATGTCATAGAAAAGAA
ACGGACCCTTCTTTCTGGTGAAGTCAGAGGAACGAAATACTATATTGTTCGCTGGAAAGAACTAGTTGGTGACGAATATA
AGCCGAAAAGTAGACTTTTCATACACGGAGACGACCGATTAGGTGCATACACCAAAGCGAAGAAATTAATGATAGAAGTG
CATAAAGAATTCATCCCAATTTTGAAAAAGATGGGACGCTTTAATATTATTAAAGTGAGCTAG

Upstream 100 bases:

>100_bases
TTTTTACAGCAAATTAACAATATAATCAGCATTCACTATTAACAATAAACTCAATTGCTGTAATATTACTATTAATACGT
TTTCCGATAATATAATTATT

Downstream 100 bases:

>100_bases
TTTTTTATACATACAAAAATGGCGGAATTCTATTCCGCCATTTTTATTTAGAGCTAAGTAACGTTACATTTTATCAGCGA
CTGAATGATAACCTCGTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MNKKKHTLSPRAQELRAEWTGMKSDHRFISHSFNCVKVHIHTPDDGMYNRSVGCLKQGRDKALKEALKQRNQVGRELWGS
CWNAVLNTQSLFERLPHSLEPDVIEKKRTLLSGEVRGTKYYIVRWKELVGDEYKPKSRLFIHGDDRLGAYTKAKKLMIEV
HKEFIPILKKMGRFNIIKVS

Sequences:

>Translated_180_residues
MNKKKHTLSPRAQELRAEWTGMKSDHRFISHSFNCVKVHIHTPDDGMYNRSVGCLKQGRDKALKEALKQRNQVGRELWGS
CWNAVLNTQSLFERLPHSLEPDVIEKKRTLLSGEVRGTKYYIVRWKELVGDEYKPKSRLFIHGDDRLGAYTKAKKLMIEV
HKEFIPILKKMGRFNIIKVS
>Mature_180_residues
MNKKKHTLSPRAQELRAEWTGMKSDHRFISHSFNCVKVHIHTPDDGMYNRSVGCLKQGRDKALKEALKQRNQVGRELWGS
CWNAVLNTQSLFERLPHSLEPDVIEKKRTLLSGEVRGTKYYIVRWKELVGDEYKPKSRLFIHGDDRLGAYTKAKKLMIEV
HKEFIPILKKMGRFNIIKVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21017; Mature: 21017

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKKHTLSPRAQELRAEWTGMKSDHRFISHSFNCVKVHIHTPDDGMYNRSVGCLKQGRD
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHH
KALKEALKQRNQVGRELWGSCWNAVLNTQSLFERLPHSLEPDVIEKKRTLLSGEVRGTKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
YIVRWKELVGDEYKPKSRLFIHGDDRLGAYTKAKKLMIEVHKEFIPILKKMGRFNIIKVS
EEEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MNKKKHTLSPRAQELRAEWTGMKSDHRFISHSFNCVKVHIHTPDDGMYNRSVGCLKQGRD
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHH
KALKEALKQRNQVGRELWGSCWNAVLNTQSLFERLPHSLEPDVIEKKRTLLSGEVRGTKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEE
YIVRWKELVGDEYKPKSRLFIHGDDRLGAYTKAKKLMIEVHKEFIPILKKMGRFNIIKVS
EEEEEHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA