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The map label for this gene is ycfM [C]

Identifier: 209694832

GI number: 209694832

Start: 1408058

End: 1408648

Strand: Direct

Name: ycfM [C]

Synonym: VSAL_I1298

Alternate gene names: 209694832

Gene position: 1408058-1408648 (Clockwise)

Preceding gene: 209694831

Following gene: 209694833

Centisome position: 42.35

GC content: 37.39

Gene sequence:

>591_bases
ATGAAAAAAAGTGTTGTTGCATTATTAGGCTTAGCTGTACTACTTGGTGGTTGTTCTAATAAAGTAAGTTACGGTGATGC
TCAAGCTGTTGAAACAACAACGGTTGACTTTGGCTCGACTGATTTGCAAAAAATTGCCGGTGAAATGACAGAAAGCATGC
TTTCATCTGGCTCTGTAGCACAAATCACTCAAGGTAATCGTCCAATTGTTTTTGTTGAAAGCATTAAAAACAAAACAAGC
GAGCACATTGATACAGAATCAGTAACTGACTCAATCAGTACTAAATTGCTTAACTCTGGTAAATTCCGTTTTGTTGATAT
GGATCGTGTAGAAGCGGTTCGTACGCAACTGAATTTTCAAAATACGGATGAGCTAGTAAATCAAAATACTGCGATTCAAT
TCGGTAAAATGGTTGGTGCTCAATACATGCTTTACGGTAACCTTTCTAGCATCGTGAAAAATGCAGGTAGCGATAAAGAC
GTATATTACAAAATGACAATGCGTTTAATGGATTTAGAAACAGGTCTGATCGAATGGGCTGATGAAACTGAAATCCGTAA
GCAACAAGAGAAAAGCCTATTAGGTTGGTAA

Upstream 100 bases:

>100_bases
GCAATGAAACCAGAAGCGACGCAATTCCGTATTCAAATTCGTACATTAGAATAATCTTTCTTTATTGAAGATAGAAACCA
CTTATTTAGAGGAAAATAAA

Downstream 100 bases:

>100_bases
TTACCACCCAATAGCTAACTTGAGTTTGTAATAAATGCCAGAGCGGGTAACTGCTCTGGCATTTTTGTATGAGAAATAAA
AACAATAAGTTGGTTAAAAT

Product: lipoprotein

Products: NA

Alternate protein names: Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKKSVVALLGLAVLLGGCSNKVSYGDAQAVETTTVDFGSTDLQKIAGEMTESMLSSGSVAQITQGNRPIVFVESIKNKTS
EHIDTESVTDSISTKLLNSGKFRFVDMDRVEAVRTQLNFQNTDELVNQNTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLETGLIEWADETEIRKQQEKSLLGW

Sequences:

>Translated_196_residues
MKKSVVALLGLAVLLGGCSNKVSYGDAQAVETTTVDFGSTDLQKIAGEMTESMLSSGSVAQITQGNRPIVFVESIKNKTS
EHIDTESVTDSISTKLLNSGKFRFVDMDRVEAVRTQLNFQNTDELVNQNTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLETGLIEWADETEIRKQQEKSLLGW
>Mature_196_residues
MKKSVVALLGLAVLLGGCSNKVSYGDAQAVETTTVDFGSTDLQKIAGEMTESMLSSGSVAQITQGNRPIVFVESIKNKTS
EHIDTESVTDSISTKLLNSGKFRFVDMDRVEAVRTQLNFQNTDELVNQNTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLETGLIEWADETEIRKQQEKSLLGW

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=120, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21626; Mature: 21626

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVVALLGLAVLLGGCSNKVSYGDAQAVETTTVDFGSTDLQKIAGEMTESMLSSGSVA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
QITQGNRPIVFVESIKNKTSEHIDTESVTDSISTKLLNSGKFRFVDMDRVEAVRTQLNFQ
EEECCCCCEEEEHHHHCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCC
NTDELVNQNTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRLMDLETGLIEWA
CHHHHHCCCHHHHHHHHHCCHHEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DETEIRKQQEKSLLGW
CHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKSVVALLGLAVLLGGCSNKVSYGDAQAVETTTVDFGSTDLQKIAGEMTESMLSSGSVA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
QITQGNRPIVFVESIKNKTSEHIDTESVTDSISTKLLNSGKFRFVDMDRVEAVRTQLNFQ
EEECCCCCEEEEHHHHCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCC
NTDELVNQNTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRLMDLETGLIEWA
CHHHHHCCCHHHHHHHHHCCHHEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DETEIRKQQEKSLLGW
CHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA