Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694781

Identifier: 209694781

GI number: 209694781

Start: 1346786

End: 1347229

Strand: Direct

Name: 209694781

Synonym: VSAL_I1237

Alternate gene names: NA

Gene position: 1346786-1347229 (Clockwise)

Preceding gene: 209694780

Following gene: 209694782

Centisome position: 40.5

GC content: 34.01

Gene sequence:

>444_bases
ATGTTAGAACGTTTTTTTGAAAAAACCATGAAAGCCTATTTATTGGGGACAGGATTTTTAACCGCAACTGCATTCATGAC
GTTTTTAGCGCCAGAATGGAGCATGAAAAATATCTTTTTTTATAATGAAGCAATGATGGAGAATAAAGAGTACTTTCAAG
CAATTTATCAACATTGGGGTGTTATGATTGGTTGTATTGGTGTGCTGTTAATGTTCTCCGCTAAATATAAACAATTGCGT
ACTTCAACTATGATTTATAGTGCGTTTGAGAAATCAATGTTTGTTGGGTTATTCCTGTATAACGTATGTGTCAATGAGTA
TAGCTGGTTTTATGGATGGAGTGGTGGGTTCGTATTGGATAGCTTTGTTACTATCTACTCACTTGTTTATTTATATTATT
ATCTAACGCGTGATAAATTGAAAACACCAGCGCACTTACGTTAA

Upstream 100 bases:

>100_bases
TCTGTTTTCTGTCAAAGGTAATGATTTTAAAGTTACTTGATGAGTATTATTAGAAAGTAATTCCATACTAAGTTTGTAAC
CACTTTTTGAGAGTTGAATT

Downstream 100 bases:

>100_bases
TTAGAACGTATCGTATTATTACATAATGTTTGATTTAAGGGCCTAGAGGGAGAAATATTTCTAGGTTTTTTTACTGATGA
GTTCTAGAGACCCGTTAATA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MLERFFEKTMKAYLLGTGFLTATAFMTFLAPEWSMKNIFFYNEAMMENKEYFQAIYQHWGVMIGCIGVLLMFSAKYKQLR
TSTMIYSAFEKSMFVGLFLYNVCVNEYSWFYGWSGGFVLDSFVTIYSLVYLYYYLTRDKLKTPAHLR

Sequences:

>Translated_147_residues
MLERFFEKTMKAYLLGTGFLTATAFMTFLAPEWSMKNIFFYNEAMMENKEYFQAIYQHWGVMIGCIGVLLMFSAKYKQLR
TSTMIYSAFEKSMFVGLFLYNVCVNEYSWFYGWSGGFVLDSFVTIYSLVYLYYYLTRDKLKTPAHLR
>Mature_147_residues
MLERFFEKTMKAYLLGTGFLTATAFMTFLAPEWSMKNIFFYNEAMMENKEYFQAIYQHWGVMIGCIGVLLMFSAKYKQLR
TSTMIYSAFEKSMFVGLFLYNVCVNEYSWFYGWSGGFVLDSFVTIYSLVYLYYYLTRDKLKTPAHLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17469; Mature: 17469

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERFFEKTMKAYLLGTGFLTATAFMTFLAPEWSMKNIFFYNEAMMENKEYFQAIYQHWG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHH
VMIGCIGVLLMFSAKYKQLRTSTMIYSAFEKSMFVGLFLYNVCVNEYSWFYGWSGGFVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHH
SFVTIYSLVYLYYYLTRDKLKTPAHLR
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLERFFEKTMKAYLLGTGFLTATAFMTFLAPEWSMKNIFFYNEAMMENKEYFQAIYQHWG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHH
VMIGCIGVLLMFSAKYKQLRTSTMIYSAFEKSMFVGLFLYNVCVNEYSWFYGWSGGFVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHH
SFVTIYSLVYLYYYLTRDKLKTPAHLR
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA