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The map label for this gene is allS [H]

Identifier: 209694776

GI number: 209694776

Start: 1342496

End: 1343359

Strand: Reverse

Name: allS [H]

Synonym: VSAL_I1232

Alternate gene names: 209694776

Gene position: 1343359-1342496 (Counterclockwise)

Preceding gene: 209694784

Following gene: 209694770

Centisome position: 40.4

GC content: 36.46

Gene sequence:

>864_bases
ATGTTTAATCTCCAGCAACTTGAAACTCTGATTCTTTGTGTCGAGTGTGGTTCATTCTCTGCCGCTGCTCGAAAATTGGG
AAAAGCGCAATCAGCCGTTAGTACTGCTATTGCTAATTTAGAGATAGATACGGGAGTGGAGATATTTGATCGCTCGACAC
GCCTTCCTACATTGACACCCCATGGCAAGCGCTTGTATACCCAATCTATCCATTTATTATCTCAGGCAAAAGACATTGAA
ACCATGCTTCACTCTTTTAGCCTCGGAGTTGAAGATACATTAACCATCGTAATTAATGAGTTACTATTAACACCTACATT
TTTTAACGTAATCAATGAGTTTTATCTGTATTTCCCTCATACAGAGTTGCATATTAATATCGCAGAAAATAAAGATATCT
CTGAATTAGTCGCCCAAGGAAAAGCCTCTATAGGGTTTATGCTCTGTGACGATGCTCTTCCTCAAAAAGTAGAACTTGGC
TTGGTGGGTTATTTACCTATTTCGATGGTAGCCAATAATAATCATCCCTTGCATTCACAAGATTCTATTCATCTCAATGA
ATTAAAGCGATACCATCAAATACTACTGACTAATATGCATAGCCCTTGGAATGTTCATTTTTCATCTTCCGTGACTAAAA
CGAACAATGCTAGTGCTCTGCAATCGTTATTAACGGTTAATGATTCTTGGGGATTTGTTCCTGACCATCTAACTAAAAAA
AATAACGTGTTAAAAATATTAGATTTAGACTCAGAAGAAAAAAATTGGTTGTTACATATAGACCGTGTTGTTATAAAAAA
CAATAACATTGGTCAAGCCTACTCTTGGTTATATCAACATTCCGTAGACATGTTTGAACAATAA

Upstream 100 bases:

>100_bases
AAGTAAAATAACCTTATAAGTATTAATTACGCTCATGCATTATCATGTGATAATTTGATACACTCTAACTCGTTATTATC
TGAATAATAGATGGGTTAAT

Downstream 100 bases:

>100_bases
AATACGATTAATCATTCAATGCTACTTCTCAGTAAAATACTCTAACAAGATCTGATGCCACTCTGTCGTTTCACGAATTT
GTAATAAAGCCCGATTGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MFNLQQLETLILCVECGSFSAAARKLGKAQSAVSTAIANLEIDTGVEIFDRSTRLPTLTPHGKRLYTQSIHLLSQAKDIE
TMLHSFSLGVEDTLTIVINELLLTPTFFNVINEFYLYFPHTELHINIAENKDISELVAQGKASIGFMLCDDALPQKVELG
LVGYLPISMVANNNHPLHSQDSIHLNELKRYHQILLTNMHSPWNVHFSSSVTKTNNASALQSLLTVNDSWGFVPDHLTKK
NNVLKILDLDSEEKNWLLHIDRVVIKNNNIGQAYSWLYQHSVDMFEQ

Sequences:

>Translated_287_residues
MFNLQQLETLILCVECGSFSAAARKLGKAQSAVSTAIANLEIDTGVEIFDRSTRLPTLTPHGKRLYTQSIHLLSQAKDIE
TMLHSFSLGVEDTLTIVINELLLTPTFFNVINEFYLYFPHTELHINIAENKDISELVAQGKASIGFMLCDDALPQKVELG
LVGYLPISMVANNNHPLHSQDSIHLNELKRYHQILLTNMHSPWNVHFSSSVTKTNNASALQSLLTVNDSWGFVPDHLTKK
NNVLKILDLDSEEKNWLLHIDRVVIKNNNIGQAYSWLYQHSVDMFEQ
>Mature_287_residues
MFNLQQLETLILCVECGSFSAAARKLGKAQSAVSTAIANLEIDTGVEIFDRSTRLPTLTPHGKRLYTQSIHLLSQAKDIE
TMLHSFSLGVEDTLTIVINELLLTPTFFNVINEFYLYFPHTELHINIAENKDISELVAQGKASIGFMLCDDALPQKVELG
LVGYLPISMVANNNHPLHSQDSIHLNELKRYHQILLTNMHSPWNVHFSSSVTKTNNASALQSLLTVNDSWGFVPDHLTKK
NNVLKILDLDSEEKNWLLHIDRVVIKNNNIGQAYSWLYQHSVDMFEQ

Specific function: Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=204, Percent_Identity=32.3529411764706, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786508, Length=249, Percent_Identity=24.0963855421687, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=146, Percent_Identity=28.0821917808219, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789492, Length=143, Percent_Identity=32.8671328671329, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32395; Mature: 32395

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLQQLETLILCVECGSFSAAARKLGKAQSAVSTAIANLEIDTGVEIFDRSTRLPTLTP
CCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCC
HGKRLYTQSIHLLSQAKDIETMLHSFSLGVEDTLTIVINELLLTPTFFNVINEFYLYFPH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHEEEECC
TELHINIAENKDISELVAQGKASIGFMLCDDALPQKVELGLVGYLPISMVANNNHPLHSQ
CEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEECCCCCCCCC
DSIHLNELKRYHQILLTNMHSPWNVHFSSSVTKTNNASALQSLLTVNDSWGFVPDHLTKK
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHCCC
NNVLKILDLDSEEKNWLLHIDRVVIKNNNIGQAYSWLYQHSVDMFEQ
CCEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNLQQLETLILCVECGSFSAAARKLGKAQSAVSTAIANLEIDTGVEIFDRSTRLPTLTP
CCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCC
HGKRLYTQSIHLLSQAKDIETMLHSFSLGVEDTLTIVINELLLTPTFFNVINEFYLYFPH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHEEEECC
TELHINIAENKDISELVAQGKASIGFMLCDDALPQKVELGLVGYLPISMVANNNHPLHSQ
CEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEECCCCCCCCC
DSIHLNELKRYHQILLTNMHSPWNVHFSSSVTKTNNASALQSLLTVNDSWGFVPDHLTKK
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHCCC
NNVLKILDLDSEEKNWLLHIDRVVIKNNNIGQAYSWLYQHSVDMFEQ
CCEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]