| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694735
Identifier: 209694735
GI number: 209694735
Start: 1296349
End: 1296669
Strand: Direct
Name: 209694735
Synonym: VSAL_I1189
Alternate gene names: NA
Gene position: 1296349-1296669 (Clockwise)
Preceding gene: 209694734
Following gene: 209694737
Centisome position: 38.99
GC content: 38.94
Gene sequence:
>321_bases ATGATATTTTTATCGATCTTAGCCATGACGACATTGGTGTTTTTAAGCCGCTATTTATTTTTAGAACCTAAACTCCCACT GCGACTTAATGCTCAAACGCAACGGTTATTAAGTTATTCTAGTCCGGCGGTGTTAACCGCTATTTGGGCTCCAATTGTGT TTATGCCAAACAATGAGTTGTCTCTATCTGGTTCTAATCCGTACTTATGGGCCGCATTAATTGCGGCAGTAATCGCATGG AAAACTAAGAATGTATTATTGACGACCATTGTAAGCATGGTGGTGTTTCTAGTGCTGAATTTATGGGTATTTATAGGGTA A
Upstream 100 bases:
>100_bases TCGTATTAAATTATTTCTCAGTAGAAGGGAGTTTGATGATAGCAAGCATTGGTGGCATGTGTTTAGGGTATTTAACGGAA ACCCTAAGAGGGGGTAGGTC
Downstream 100 bases:
>100_bases GGCTACCTTGCGACCCATTCCGTTTCTATTAGGGTTTTATCGCCTGATTTTAAGCGACTAAGAAAAATATCACCGCAGTG GATTTCGCCTACGCCTTGTG
Product: branched-chain amino acid transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 106; Mature: 106
Protein sequence:
>106_residues MIFLSILAMTTLVFLSRYLFLEPKLPLRLNAQTQRLLSYSSPAVLTAIWAPIVFMPNNELSLSGSNPYLWAALIAAVIAW KTKNVLLTTIVSMVVFLVLNLWVFIG
Sequences:
>Translated_106_residues MIFLSILAMTTLVFLSRYLFLEPKLPLRLNAQTQRLLSYSSPAVLTAIWAPIVFMPNNELSLSGSNPYLWAALIAAVIAW KTKNVLLTTIVSMVVFLVLNLWVFIG >Mature_106_residues MIFLSILAMTTLVFLSRYLFLEPKLPLRLNAQTQRLLSYSSPAVLTAIWAPIVFMPNNELSLSGSNPYLWAALIAAVIAW KTKNVLLTTIVSMVVFLVLNLWVFIG
Specific function: Unknown
COG id: COG4392
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11885; Mature: 11885
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFLSILAMTTLVFLSRYLFLEPKLPLRLNAQTQRLLSYSSPAVLTAIWAPIVFMPNNEL CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCCHHHHHHHHCEEECCCCCE SLSGSNPYLWAALIAAVIAWKTKNVLLTTIVSMVVFLVLNLWVFIG EECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIFLSILAMTTLVFLSRYLFLEPKLPLRLNAQTQRLLSYSSPAVLTAIWAPIVFMPNNEL CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCCHHHHHHHHCEEECCCCCE SLSGSNPYLWAALIAAVIAWKTKNVLLTTIVSMVVFLVLNLWVFIG EECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA