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The map label for this gene is ybfI [H]

Identifier: 209694733

GI number: 209694733

Start: 1294730

End: 1295566

Strand: Direct

Name: ybfI [H]

Synonym: VSAL_I1187

Alternate gene names: 209694733

Gene position: 1294730-1295566 (Clockwise)

Preceding gene: 209694731

Following gene: 209694734

Centisome position: 38.94

GC content: 40.26

Gene sequence:

>837_bases
ATGATGAATGATGAGAAAGTAAAAAAGGAAATAGCACACTACCAAGTAGCAGAAGAGCTTGGTGGGCTTGAAATATTAAA
TGCTGATTATGAAAAGCAGACTTTCTCACGTCACAGTCATGAAGGATATACGATTGGTGTCATTGAACGTGGTGCTCAAC
ATTTCTATCGCACTGGTGGTAATCATACCGCACCGCAAGACAGTATTATCTTAATTAATGCGGATGATATACATAGCGGT
CATTCTGCTACTGATGGAGGGTGGGGCTATAAGGCGATGTATCCTTTGCCAGAACAATTAGAAAGTTTAAGCAGAGAGTT
GAGCTACGGGCAAGTTGGCGCGCCATATTTTCCAGAGCCTGTGGTTTATGATTCAGAACTAGCGAACCAGTTGAGGCTGG
TGTTCACCATGTTGGATCAATCGGATAACCGTTTATTAAGAGAAACCTTAGTCTATGGTGTTTTGGTTAAACTCATGTGT
AAGCACAGTAAAGCGCGTTATACCGATGTAACGATTTCAAAAGCTCAAAAGCCATTGTATTTAATTAAAGAATTTTTAGA
CGACTTCCCTCAAGCGGATATCTCTCTTGAAGATTTATCACAGCTTAGTAATCTGAGTGCTTATCATCTAGTTAGATCGT
TTCAAAAGACATTTGGTCTTCCTCCACACAGCTATCAAATTCAGTCTCGTTTACGAATGGCACGTAAACTTCTTAAGCAA
GGGCATTCCTTGTCTGATACTGCACAAGAAACGGGATTTTATGATCAAAGCCATTTACACCGTCATTTTAAAAAAGCGAT
GGGGATAACCCCAGGGCAATACCTCAAACTGTTTTAG

Upstream 100 bases:

>100_bases
TTTATTGTTAATAAAATTGAATGTTCGATAATGCGCAATTTTGTACAAAAGAAATGGGAGGGCTTACTATATACTTCAAT
AAATAGGGATAAATGTGTTT

Downstream 100 bases:

>100_bases
CAAGTTTGTACAATCTTAGGTAAAGGAATACAGCTCTAATATAGGCTGATTTGATTTAATAAAGAGTAGTTTATGGATAT
AAATACCGCCGTACAACCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MMNDEKVKKEIAHYQVAEELGGLEILNADYEKQTFSRHSHEGYTIGVIERGAQHFYRTGGNHTAPQDSIILINADDIHSG
HSATDGGWGYKAMYPLPEQLESLSRELSYGQVGAPYFPEPVVYDSELANQLRLVFTMLDQSDNRLLRETLVYGVLVKLMC
KHSKARYTDVTISKAQKPLYLIKEFLDDFPQADISLEDLSQLSNLSAYHLVRSFQKTFGLPPHSYQIQSRLRMARKLLKQ
GHSLSDTAQETGFYDQSHLHRHFKKAMGITPGQYLKLF

Sequences:

>Translated_278_residues
MMNDEKVKKEIAHYQVAEELGGLEILNADYEKQTFSRHSHEGYTIGVIERGAQHFYRTGGNHTAPQDSIILINADDIHSG
HSATDGGWGYKAMYPLPEQLESLSRELSYGQVGAPYFPEPVVYDSELANQLRLVFTMLDQSDNRLLRETLVYGVLVKLMC
KHSKARYTDVTISKAQKPLYLIKEFLDDFPQADISLEDLSQLSNLSAYHLVRSFQKTFGLPPHSYQIQSRLRMARKLLKQ
GHSLSDTAQETGFYDQSHLHRHFKKAMGITPGQYLKLF
>Mature_278_residues
MMNDEKVKKEIAHYQVAEELGGLEILNADYEKQTFSRHSHEGYTIGVIERGAQHFYRTGGNHTAPQDSIILINADDIHSG
HSATDGGWGYKAMYPLPEQLESLSRELSYGQVGAPYFPEPVVYDSELANQLRLVFTMLDQSDNRLLRETLVYGVLVKLMC
KHSKARYTDVTISKAQKPLYLIKEFLDDFPQADISLEDLSQLSNLSAYHLVRSFQKTFGLPPHSYQIQSRLRMARKLLKQ
GHSLSDTAQETGFYDQSHLHRHFKKAMGITPGQYLKLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31712; Mature: 31712

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNDEKVKKEIAHYQVAEELGGLEILNADYEKQTFSRHSHEGYTIGVIERGAQHFYRTGG
CCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCC
NHTAPQDSIILINADDIHSGHSATDGGWGYKAMYPLPEQLESLSRELSYGQVGAPYFPEP
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCC
VVYDSELANQLRLVFTMLDQSDNRLLRETLVYGVLVKLMCKHSKARYTDVTISKAQKPLY
CEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHH
LIKEFLDDFPQADISLEDLSQLSNLSAYHLVRSFQKTFGLPPHSYQIQSRLRMARKLLKQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GHSLSDTAQETGFYDQSHLHRHFKKAMGITPGQYLKLF
CCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHEECC
>Mature Secondary Structure
MMNDEKVKKEIAHYQVAEELGGLEILNADYEKQTFSRHSHEGYTIGVIERGAQHFYRTGG
CCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCC
NHTAPQDSIILINADDIHSGHSATDGGWGYKAMYPLPEQLESLSRELSYGQVGAPYFPEP
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCC
VVYDSELANQLRLVFTMLDQSDNRLLRETLVYGVLVKLMCKHSKARYTDVTISKAQKPLY
CEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHH
LIKEFLDDFPQADISLEDLSQLSNLSAYHLVRSFQKTFGLPPHSYQIQSRLRMARKLLKQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GHSLSDTAQETGFYDQSHLHRHFKKAMGITPGQYLKLF
CCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]