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The map label for this gene is vasF-1

Identifier: 209694729

GI number: 209694729

Start: 1287108

End: 1288232

Strand: Direct

Name: vasF-1

Synonym: VSAL_I1182

Alternate gene names: NA

Gene position: 1287108-1288232 (Clockwise)

Preceding gene: 209694728

Following gene: 209694730

Centisome position: 38.71

GC content: 35.38

Gene sequence:

>1125_bases
GTGAGTGAATTATTTAATGACGAAGCGACAATAGAACTTCGTCATACTAAAGAAAAAATACCGGCAAAGAAAAAAAATGC
AGAACTTAAGGATATAGATCTCTTAGGTGCAGAGTGGTTGATTGATAACCTCTCTGTTTATAATAGCTCGTTATTGAATT
CTGCAACTGAGCTATTTGCAATTTTGGTCACTTTATCTCGTCAAGGCGAACCGCGAGATATAAATCGATTTAGGCAACGT
TTGTTGGATGAAATATCTGTATTTCGCCAACGTGGAGCACATCTTGAATATCACCCAAGTATTATAGAAAAAAGTTGTTT
TGTATTATGTGCCGCTTTTGATGAAGCCATTCTTTATACGCAATGGGGGGAAAGTGCTCGTTGGGAAAACCATTCATTAT
TAAGTAAGGTTTTTTCTCAACGTAACGGGGGCGAAGCTTTTTTTACATTATTGGATAAAGCGAGCCAACAGCCAGCAAAA
TTAGTAGATTTTTTAGAATTGCAATACGTTTTACTTATGTTGGGATTTAAAGGACGTTTCCGTCACGATAATGAAAATGT
TTTACATGAAATTCAATCAAATGTGTATTCCATTATTCGTCATTATCGCAGTGAATCTGTATTACCTGTACCAAAAATAC
CAGAACTAATTGAAGGTAAACAACCATGGTTAATGCTAAGTATGTCGAAAACATTAGTGATTGCTTTCTTTATCACAATC
ATAGTTTATGGTGCGTCAGAGTATTGGTATTTTAATCGTAGCCAGCCAATTCTTGCACAATTTAATGCTATCAATACGTC
TAGTGTAGGTAAGAAAAATAACAAAGAATTAATTAATATTAGTTCGGGTTCAGATATTGGGAAAATAGTTGATAATAGAA
AACAAGAACTTAAAGAAACTCTGCAATGGGAAGTTGTGCTTGCTGCATTTACTCGTTCATTAGATGCTGTGCGGTTGGTG
TCAGAATTACAGCAAGCGGGGTATGAACCATTCACACGAGAAACAGACCATGGTGTCGAGCTTTATATTAGAGCTGGAGA
TAATTTATCGGTTATACGAAAGCTCAAAAATGAATTAAATATTCGCTTTGACTTGAATGCTACGATTAAGAGAGCGCAGA
TATAA

Upstream 100 bases:

>100_bases
TGGCAAGCCTTAGTGAAAAATGATGAGCCTATCGCCTTGCATATCGACGACCGTATCGAAGATGTTCACGTTGAATTTCA
TGTAATTAGGTAGGTGGTTT

Downstream 100 bases:

>100_bases
TATGATGAAAAAGATCAGTGCGGTTTTGTTTGTGATATTAATCATCATAGGAACAATATTATGTTGGACTTACTTATTTA
ACGATGAATGGAAATGGGCA

Product: type VI secretion protein VasF-1

Products: NA

Alternate protein names: OmpA Family Protein; OmpA/MotB Domain-Containing Protein; Outer Membrane Protein; Type VI Secretion System Core Protein; Type VI Secretion System OmpA/MotB Family Protein; DotU Family Type IV/VI Secretion System Protein; Flagellar Motor Rotation Protein MotB; Type IV/VI Secretion System Protein; DotU Family Type IV / VI Secretion System Protein; OmpA/MotB Domain Protein; Type VI Secretion System Protein ImpK; OmpA-Family Protein; Type IV / VI Secretion System Protein; Type VI Secretion; Outer Membrane Protein Ompa/Motb Family; OmpA/MotB Family Outer Membrane Protein; Flagellar Motor Protein; Type IV / VI Secretion System Family Protein DotU; Type VI Secretion System VasF

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSELFNDEATIELRHTKEKIPAKKKNAELKDIDLLGAEWLIDNLSVYNSSLLNSATELFAILVTLSRQGEPRDINRFRQR
LLDEISVFRQRGAHLEYHPSIIEKSCFVLCAAFDEAILYTQWGESARWENHSLLSKVFSQRNGGEAFFTLLDKASQQPAK
LVDFLELQYVLLMLGFKGRFRHDNENVLHEIQSNVYSIIRHYRSESVLPVPKIPELIEGKQPWLMLSMSKTLVIAFFITI
IVYGASEYWYFNRSQPILAQFNAINTSSVGKKNNKELINISSGSDIGKIVDNRKQELKETLQWEVVLAAFTRSLDAVRLV
SELQQAGYEPFTRETDHGVELYIRAGDNLSVIRKLKNELNIRFDLNATIKRAQI

Sequences:

>Translated_374_residues
MSELFNDEATIELRHTKEKIPAKKKNAELKDIDLLGAEWLIDNLSVYNSSLLNSATELFAILVTLSRQGEPRDINRFRQR
LLDEISVFRQRGAHLEYHPSIIEKSCFVLCAAFDEAILYTQWGESARWENHSLLSKVFSQRNGGEAFFTLLDKASQQPAK
LVDFLELQYVLLMLGFKGRFRHDNENVLHEIQSNVYSIIRHYRSESVLPVPKIPELIEGKQPWLMLSMSKTLVIAFFITI
IVYGASEYWYFNRSQPILAQFNAINTSSVGKKNNKELINISSGSDIGKIVDNRKQELKETLQWEVVLAAFTRSLDAVRLV
SELQQAGYEPFTRETDHGVELYIRAGDNLSVIRKLKNELNIRFDLNATIKRAQI
>Mature_373_residues
SELFNDEATIELRHTKEKIPAKKKNAELKDIDLLGAEWLIDNLSVYNSSLLNSATELFAILVTLSRQGEPRDINRFRQRL
LDEISVFRQRGAHLEYHPSIIEKSCFVLCAAFDEAILYTQWGESARWENHSLLSKVFSQRNGGEAFFTLLDKASQQPAKL
VDFLELQYVLLMLGFKGRFRHDNENVLHEIQSNVYSIIRHYRSESVLPVPKIPELIEGKQPWLMLSMSKTLVIAFFITII
VYGASEYWYFNRSQPILAQFNAINTSSVGKKNNKELINISSGSDIGKIVDNRKQELKETLQWEVVLAAFTRSLDAVRLVS
ELQQAGYEPFTRETDHGVELYIRAGDNLSVIRKLKNELNIRFDLNATIKRAQI

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42999; Mature: 42868

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELFNDEATIELRHTKEKIPAKKKNAELKDIDLLGAEWLIDNLSVYNSSLLNSATELFA
CCCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILVTLSRQGEPRDINRFRQRLLDEISVFRQRGAHLEYHPSIIEKSCFVLCAAFDEAILYT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHEEE
QWGESARWENHSLLSKVFSQRNGGEAFFTLLDKASQQPAKLVDFLELQYVLLMLGFKGRF
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
RHDNENVLHEIQSNVYSIIRHYRSESVLPVPKIPELIEGKQPWLMLSMSKTLVIAFFITI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHH
IVYGASEYWYFNRSQPILAQFNAINTSSVGKKNNKELINISSGSDIGKIVDNRKQELKET
HHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
LQWEVVLAAFTRSLDAVRLVSELQQAGYEPFTRETDHGVELYIRAGDNLSVIRKLKNELN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCE
IRFDLNATIKRAQI
EEEECCCCHHCCCC
>Mature Secondary Structure 
SELFNDEATIELRHTKEKIPAKKKNAELKDIDLLGAEWLIDNLSVYNSSLLNSATELFA
CCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILVTLSRQGEPRDINRFRQRLLDEISVFRQRGAHLEYHPSIIEKSCFVLCAAFDEAILYT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHEEE
QWGESARWENHSLLSKVFSQRNGGEAFFTLLDKASQQPAKLVDFLELQYVLLMLGFKGRF
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
RHDNENVLHEIQSNVYSIIRHYRSESVLPVPKIPELIEGKQPWLMLSMSKTLVIAFFITI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHH
IVYGASEYWYFNRSQPILAQFNAINTSSVGKKNNKELINISSGSDIGKIVDNRKQELKET
HHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
LQWEVVLAAFTRSLDAVRLVSELQQAGYEPFTRETDHGVELYIRAGDNLSVIRKLKNELN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCE
IRFDLNATIKRAQI
EEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA