BacMap

Definition	Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession	NC_011312
Length	3,325,165

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The map label for this gene is yciK [H]

Identifier: 209694709

GI number: 209694709

Start: 1263713

End: 1264453

Strand: Reverse

Name: yciK [H]

Synonym: VSAL_I1160

Alternate gene names: 209694709

Gene position: 1264453-1263713 (Counterclockwise)

Preceding gene: 209694711

Following gene: 209694707

Centisome position: 38.03

GC content: 40.76

Gene sequence:

>741_bases
GTGAACTATCACGTTTCAGCTAATGCACTAAAAAATAAAACAATTCTCGTTACTGGTGCAGGAGATGGTATTGGTAAACA
AGCTGCATTAAGTTACGCAAAACACGGCGCTACGGTTATTTTATTAGGCAGAACTGTCGCTAAATTAGAAGCCGTTTATG
ATGAAATTGAAACCGCTGGCTACCCTACCCCCGCCATTATTCCTCTGGATCTAAAAGGCGCAAAAAAACAGCATTATATT
GATATGGCAGAGACCATTCAAAGTCAATTTGGCAAACTTGATGGACTGCTTCATAACGCTGGTCTATTAGGTATTCTTAG
TCCTTTCGAACAATTTGAAGAATCTATTTTTGATGAAGTAATGCAGATTAATGTAAAAGCGCAATTCTTAATGACTCAAG
CTTTACTGCCTGTCTTACAAAAATCAGACGACTCTCGCATTATCTTCACGACGTCAACGGTCGGACATCAAGGCCGTGCT
TTTTGGGGAGCTTACGCTATCTCTAAATTTGCGACTGAAGGAATGATGCAGACACTAGCGCATGAAATGGAAGGCACTCA
CGTAAAAGTGAACGCTATAAATCCAGGTGGTACGCACACCCGTATGCGTGCTCAAGCTTTTCCTGCTGAAGACATTAGCT
TACTTAAAACACCAGAGGACTTAATGCCTTTGTACGTTTACTTAATGGCTCCTGAAAGTATTACGGTTAATGGTCAGTGC
ATTGATGCACAACCAAAATAA

Upstream 100 bases:

>100_bases
TGATAATAAATCGCACTAAACGCGCATTTTATATCAATTTATTGCGATGCTTACGTAATAAAGATCATCAAGATGAACGT
TCAGATACAAGGATGACAAA

Downstream 100 bases:

>100_bases
TCAGTTGGTGTGATGTACTAACAATAATAGATTACACCAGACAGTAAAAAGGGCTGAAACCATGTGGCTTCAACCCTTTT
TTTAATTCATCGAGAAAGCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNYHVSANALKNKTILVTGAGDGIGKQAALSYAKHGATVILLGRTVAKLEAVYDEIETAGYPTPAIIPLDLKGAKKQHYI
DMAETIQSQFGKLDGLLHNAGLLGILSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQKSDDSRIIFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTHVKVNAINPGGTHTRMRAQAFPAEDISLLKTPEDLMPLYVYLMAPESITVNGQC
IDAQPK

Sequences:

>Translated_246_residues
MNYHVSANALKNKTILVTGAGDGIGKQAALSYAKHGATVILLGRTVAKLEAVYDEIETAGYPTPAIIPLDLKGAKKQHYI
DMAETIQSQFGKLDGLLHNAGLLGILSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQKSDDSRIIFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTHVKVNAINPGGTHTRMRAQAFPAEDISLLKTPEDLMPLYVYLMAPESITVNGQC
IDAQPK
>Mature_246_residues
MNYHVSANALKNKTILVTGAGDGIGKQAALSYAKHGATVILLGRTVAKLEAVYDEIETAGYPTPAIIPLDLKGAKKQHYI
DMAETIQSQFGKLDGLLHNAGLLGILSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQKSDDSRIIFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTHVKVNAINPGGTHTRMRAQAFPAEDISLLKTPEDLMPLYVYLMAPESITVNGQC
IDAQPK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=214, Percent_Identity=30.8411214953271, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4504505, Length=235, Percent_Identity=28.5106382978723, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=25.2066115702479, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=27.8350515463918, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=29.7435897435897, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=25.4098360655738, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=23.3463035019455, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI109715829, Length=235, Percent_Identity=26.3829787234043, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=27.5132275132275, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI225579078, Length=264, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=27.8350515463918, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=26.6304347826087, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=26.2032085561497, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7657478, Length=220, Percent_Identity=26.8181818181818, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI32455239, Length=239, Percent_Identity=30.9623430962343, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI5031765, Length=239, Percent_Identity=30.9623430962343, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=24.4565217391304, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40548397, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI214010158, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI214010156, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI22758144, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI10190704, Length=187, Percent_Identity=24.0641711229947, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI119392083, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4557649, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=26.8482490272374, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI146231950, Length=239, Percent_Identity=30.5439330543933, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI166795268, Length=212, Percent_Identity=31.6037735849057, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI40254986, Length=188, Percent_Identity=26.5957446808511, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=51.4285714285714, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI87082100, Length=217, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=28.6885245901639, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=28.2258064516129, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=28.4584980237154, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=28.0334728033473, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=24.7967479674797, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=26.0330578512397, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787820, Length=233, Percent_Identity=26.1802575107296, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=23.7623762376238, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=33, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=203, Percent_Identity=29.5566502463054, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=29.7560975609756, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=209, Percent_Identity=30.622009569378, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=240, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=231, Percent_Identity=29.4372294372294, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=193, Percent_Identity=28.4974093264249, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=31.5217391304348, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=197, Percent_Identity=29.4416243654822, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=29.6875, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=216, Percent_Identity=26.3888888888889, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=210, Percent_Identity=30, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=245, Percent_Identity=24.0816326530612, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=28.8557213930348, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=27.0161290322581, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=185, Percent_Identity=25.9459459459459, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=28, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=235, Percent_Identity=25.531914893617, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=24.2914979757085, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=244, Percent_Identity=25, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=175, Percent_Identity=26.8571428571429, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=227, Percent_Identity=27.3127753303965, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=229, Percent_Identity=31.4410480349345, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=30.6122448979592, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=193, Percent_Identity=30.0518134715026, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=34.8717948717949, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=32.5301204819277, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=35.0785340314136, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=35.4166666666667, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=26.5060240963855, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI18859837, Length=240, Percent_Identity=32.0833333333333, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45553409, Length=200, Percent_Identity=33, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24647948, Length=200, Percent_Identity=33, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24647946, Length=200, Percent_Identity=33, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=204, Percent_Identity=26.9607843137255, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=26.8, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640492, Length=187, Percent_Identity=27.807486631016, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=29.608938547486, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357673, Length=203, Percent_Identity=25.615763546798, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580925, Length=211, Percent_Identity=25.1184834123223, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26778; Mature: 26778

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYHVSANALKNKTILVTGAGDGIGKQAALSYAKHGATVILLGRTVAKLEAVYDEIETAG
CCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCC
YPTPAIIPLDLKGAKKQHYIDMAETIQSQFGKLDGLLHNAGLLGILSPFEQFEESIFDEV
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
MQINVKAQFLMTQALLPVLQKSDDSRIIFTTSTVGHQGRAFWGAYAISKFATEGMMQTLA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HEMEGTHVKVNAINPGGTHTRMRAQAFPAEDISLLKTPEDLMPLYVYLMAPESITVNGQC
HHHCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHEEEEEECCCEEEECCEE
IDAQPK
ECCCCC
>Mature Secondary Structure
MNYHVSANALKNKTILVTGAGDGIGKQAALSYAKHGATVILLGRTVAKLEAVYDEIETAG
CCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCC
YPTPAIIPLDLKGAKKQHYIDMAETIQSQFGKLDGLLHNAGLLGILSPFEQFEESIFDEV
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
MQINVKAQFLMTQALLPVLQKSDDSRIIFTTSTVGHQGRAFWGAYAISKFATEGMMQTLA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HEMEGTHVKVNAINPGGTHTRMRAQAFPAEDISLLKTPEDLMPLYVYLMAPESITVNGQC
HHHCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHEEEEEECCCEEEECCEE
IDAQPK
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]