| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694694
Identifier: 209694694
GI number: 209694694
Start: 1246208
End: 1246606
Strand: Reverse
Name: 209694694
Synonym: VSAL_I1144
Alternate gene names: NA
Gene position: 1246606-1246208 (Counterclockwise)
Preceding gene: 209694695
Following gene: 209694680
Centisome position: 37.49
GC content: 36.84
Gene sequence:
>399_bases ATGAAAAAAATACTATTCACCGCATTCAGTCTTATTCTACTTTCTGGTTGTGCTTCTAATGAACAGCAAAAAGAAATTGA TATGCTTGCTGATTATAGAGCCAGCGTTCTTAGCAGCGTATTACCTTTAGAGATAGGTCCACTGACTCTACTTCGTGCAA AAGCAAAGCATGGCGTTGTTGAAATGATGTTTTTAGACAGTGGAAATGGAAAGGTCAGTACAACAGAAGTCATAGAAAAA AGTATTACTACTTTCTGTAAAGACAATGAAGTTCGCCCCGTGATTGATAAGGGAGTTACCTATCAATACATTATCCGTAA CTCACGAGGTCAGCAGCAAAATAACATTATCGTGAATGAGCAGTCTTGTTTAGATCGAGAGCAAACAGAAAAAAAATAA
Upstream 100 bases:
>100_bases GGCAAATAATGACCCTTACATCGACGCTGGCGTTTACGCTAACGTAATTGTAAAGCCATTTAAAAAAGTACTTCCTGCAT AATTGATATTAAGAATTTAA
Downstream 100 bases:
>100_bases TCTAAAACTAAAAATGCCTTCTCAATAGAAATATGAAAAGGCATTTTTTAATTTAAACAACATCAGTTTCAGATGAATTA GCGAGTAAATCGCATCACTT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MKKILFTAFSLILLSGCASNEQQKEIDMLADYRASVLSSVLPLEIGPLTLLRAKAKHGVVEMMFLDSGNGKVSTTEVIEK SITTFCKDNEVRPVIDKGVTYQYIIRNSRGQQQNNIIVNEQSCLDREQTEKK
Sequences:
>Translated_132_residues MKKILFTAFSLILLSGCASNEQQKEIDMLADYRASVLSSVLPLEIGPLTLLRAKAKHGVVEMMFLDSGNGKVSTTEVIEK SITTFCKDNEVRPVIDKGVTYQYIIRNSRGQQQNNIIVNEQSCLDREQTEKK >Mature_132_residues MKKILFTAFSLILLSGCASNEQQKEIDMLADYRASVLSSVLPLEIGPLTLLRAKAKHGVVEMMFLDSGNGKVSTTEVIEK SITTFCKDNEVRPVIDKGVTYQYIIRNSRGQQQNNIIVNEQSCLDREQTEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14811; Mature: 14811
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILFTAFSLILLSGCASNEQQKEIDMLADYRASVLSSVLPLEIGPLTLLRAKAKHGVV CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEE EMMFLDSGNGKVSTTEVIEKSITTFCKDNEVRPVIDKGVTYQYIIRNSRGQQQNNIIVNE EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEECCCCCCCCCEEEEC QSCLDREQTEKK HHHCCCHHHCCC >Mature Secondary Structure MKKILFTAFSLILLSGCASNEQQKEIDMLADYRASVLSSVLPLEIGPLTLLRAKAKHGVV CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEE EMMFLDSGNGKVSTTEVIEKSITTFCKDNEVRPVIDKGVTYQYIIRNSRGQQQNNIIVNE EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEECCCCCCCCCEEEEC QSCLDREQTEKK HHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA