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The map label for this gene is vasD

Identifier: 209694668

GI number: 209694668

Start: 1215406

End: 1215894

Strand: Reverse

Name: vasD

Synonym: VSAL_I1116

Alternate gene names: NA

Gene position: 1215894-1215406 (Counterclockwise)

Preceding gene: 209694669

Following gene: 209694667

Centisome position: 36.57

GC content: 37.83

Gene sequence:

>489_bases
ATGAAATCGTTGTTCGCTTTATTGACGATATTAATGTTCAGTGGCTGTAGCAATACCCCTGAACCAACCTACGTTGCATT
AACCCTTAATGCTTCGGCAAATCTTAACCCTGATCATGTTGATCGTCCATCACCACTCGTTATCAGGATCATTGAACTGT
CATCAATCACAAGTCTTGAGAATGCCGAATTCTTTGATTTATACAACAATGCAAAAGCCAATTTAGGTCCTGATTTTATT
GCAGAAGAAGAAATAATCTTACGTCCCGGCGATAAAAAGATCATCAAACTAAAATTAAGTGAAAAAGGACAATACCTTGC
TGTTATTGGCGCTTATCAAAATATTGAAAGTGCCGATTGGCGTTATATTTATACCGTTGAACCAGAAGAAGCTCAGAAAA
TAGAATTGATAGCGACGGATACCTCTATTGTAAAGCTGGAGCGCGTAAAGAAAAAAAACACAACCCCAGCTAATAACTCC
CACATTTAG

Upstream 100 bases:

>100_bases
AGAGCAAGACTTTGCGAAACAATACGAATCTCAACTGCAAATGTTATCTGCCGCTTTACGCGTGTAAAACACAACTAATG
ATAATTAAAGGAATACATTC

Downstream 100 bases:

>100_bases
AGGACATCGCTATGCAAAAAGTAATATGGAATGAAGGCATGCTATTACGCCCTCAACATTTCCAGCAAAATGATCGTTAT
TATAATCATCAATTACAAAC

Product: type VI secretion protein VasD

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Replication/Virulence Associated Protein; Outer Membrane Lipoprotein; Type VI Secretion Protein VasD

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKSLFALLTILMFSGCSNTPEPTYVALTLNASANLNPDHVDRPSPLVIRIIELSSITSLENAEFFDLYNNAKANLGPDFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQNIESADWRYIYTVEPEEAQKIELIATDTSIVKLERVKKKNTTPANNS
HI

Sequences:

>Translated_162_residues
MKSLFALLTILMFSGCSNTPEPTYVALTLNASANLNPDHVDRPSPLVIRIIELSSITSLENAEFFDLYNNAKANLGPDFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQNIESADWRYIYTVEPEEAQKIELIATDTSIVKLERVKKKNTTPANNS
HI
>Mature_162_residues
MKSLFALLTILMFSGCSNTPEPTYVALTLNASANLNPDHVDRPSPLVIRIIELSSITSLENAEFFDLYNNAKANLGPDFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQNIESADWRYIYTVEPEEAQKIELIATDTSIVKLERVKKKNTTPANNS
HI

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18110; Mature: 18110

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLFALLTILMFSGCSNTPEPTYVALTLNASANLNPDHVDRPSPLVIRIIELSSITSLE
CHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
NAEFFDLYNNAKANLGPDFIAEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQNIESADW
CCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
RYIYTVEPEEAQKIELIATDTSIVKLERVKKKNTTPANNSHI
EEEEEECCCCCCEEEEEECCCHHEEHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKSLFALLTILMFSGCSNTPEPTYVALTLNASANLNPDHVDRPSPLVIRIIELSSITSLE
CHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
NAEFFDLYNNAKANLGPDFIAEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQNIESADW
CCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
RYIYTVEPEEAQKIELIATDTSIVKLERVKKKNTTPANNSHI
EEEEEECCCCCCEEEEEECCCHHEEHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA