| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694582
Identifier: 209694582
GI number: 209694582
Start: 1119368
End: 1119751
Strand: Direct
Name: 209694582
Synonym: VSAL_I1021
Alternate gene names: NA
Gene position: 1119368-1119751 (Clockwise)
Preceding gene: 209694581
Following gene: 209694583
Centisome position: 33.66
GC content: 34.64
Gene sequence:
>384_bases ATGTTGGCATCAGGAGACATTTTAGCTGTGGGAGATATTTTCTCAAAAATGGGTAAAAAGGGTTCAGCCGGTAATCAGCA AATAATGCCGATGAAACCATGGGTTCAAAGATATTTAGGAAGATTGTTGATTGATGATGAAATTATAGATTTAGGTTTTC CACCTTCATATAAAGACCGTGATTTTGTTCTTTTTGATGCATTGAATACGGATGATTTAACGGAGGGTTTTGCATTTAAT AAGAAAAAAAACGCTTATTTTTCTAGTGAGCAGGGTTATGTAATGGCTTATTTAGATTTGGGGGATGGAACGTTACTGCA TATAAGAACAAGTGGTTCATCTTCGGTGTGTAAATGTGATTGTTTAGAAAGAGTCATAGTTTAA
Upstream 100 bases:
>100_bases GACTATGGAAGGGCTTTCGTATTTAAATTCGGGTATTGATTCGTGTTTTTTACTTCGTCTAGATTTAAATAAATACACTT CAATAAAAAAAGAATGTTTT
Downstream 100 bases:
>100_bases ATAATTAAGTGAATAAAAGGGTTAGAAATGAGTAACTTTAAATATAAACGAAAATATTTACCGCTAAGGAATAAATCAAG ATATTTCATTGGTACTGATT
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 127; Mature: 127
Protein sequence:
>127_residues MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV
Sequences:
>Translated_127_residues MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV >Mature_127_residues MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14098; Mature: 14098
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDR CCCCCCEEEHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC DFVLFDALNTDDLTEGFAFNKKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCD CEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEEECCCCCEEHHH CLERVIV HHHHHCC >Mature Secondary Structure MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDR CCCCCCEEEHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC DFVLFDALNTDDLTEGFAFNKKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCD CEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEEECCCCCEEHHH CLERVIV HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA