Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694582

Identifier: 209694582

GI number: 209694582

Start: 1119368

End: 1119751

Strand: Direct

Name: 209694582

Synonym: VSAL_I1021

Alternate gene names: NA

Gene position: 1119368-1119751 (Clockwise)

Preceding gene: 209694581

Following gene: 209694583

Centisome position: 33.66

GC content: 34.64

Gene sequence:

>384_bases
ATGTTGGCATCAGGAGACATTTTAGCTGTGGGAGATATTTTCTCAAAAATGGGTAAAAAGGGTTCAGCCGGTAATCAGCA
AATAATGCCGATGAAACCATGGGTTCAAAGATATTTAGGAAGATTGTTGATTGATGATGAAATTATAGATTTAGGTTTTC
CACCTTCATATAAAGACCGTGATTTTGTTCTTTTTGATGCATTGAATACGGATGATTTAACGGAGGGTTTTGCATTTAAT
AAGAAAAAAAACGCTTATTTTTCTAGTGAGCAGGGTTATGTAATGGCTTATTTAGATTTGGGGGATGGAACGTTACTGCA
TATAAGAACAAGTGGTTCATCTTCGGTGTGTAAATGTGATTGTTTAGAAAGAGTCATAGTTTAA

Upstream 100 bases:

>100_bases
GACTATGGAAGGGCTTTCGTATTTAAATTCGGGTATTGATTCGTGTTTTTTACTTCGTCTAGATTTAAATAAATACACTT
CAATAAAAAAAGAATGTTTT

Downstream 100 bases:

>100_bases
ATAATTAAGTGAATAAAAGGGTTAGAAATGAGTAACTTTAAATATAAACGAAAATATTTACCGCTAAGGAATAAATCAAG
ATATTTCATTGGTACTGATT

Product: phage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN
KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV

Sequences:

>Translated_127_residues
MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN
KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV
>Mature_127_residues
MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDRDFVLFDALNTDDLTEGFAFN
KKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCDCLERVIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14098; Mature: 14098

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDR
CCCCCCEEEHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC
DFVLFDALNTDDLTEGFAFNKKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCD
CEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEEECCCCCEEHHH
CLERVIV
HHHHHCC
>Mature Secondary Structure
MLASGDILAVGDIFSKMGKKGSAGNQQIMPMKPWVQRYLGRLLIDDEIIDLGFPPSYKDR
CCCCCCEEEHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC
DFVLFDALNTDDLTEGFAFNKKKNAYFSSEQGYVMAYLDLGDGTLLHIRTSGSSSVCKCD
CEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEEECCCCCEEHHH
CLERVIV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA