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The map label for this gene is nqrD [H]

Identifier: 209694519

GI number: 209694519

Start: 1049684

End: 1050313

Strand: Direct

Name: nqrD [H]

Synonym: VSAL_I0952

Alternate gene names: 209694519

Gene position: 1049684-1050313 (Clockwise)

Preceding gene: 209694518

Following gene: 209694520

Centisome position: 31.57

GC content: 35.4

Gene sequence:

>630_bases
ATGAATACTAAAGATCTTAAAAAGAATATTTTAGCGCCAGTATTGGATAACAACCCAATCGCGTTGCAAGTTCTTGGTGT
ATGTTCTGCGCTTGCAGTAACAACGAAATTAGAAACAGCATTTGTTATGACTATTGCAGTAATGTTTGTTACTGCATTCT
CTAACTTTTTTGTTTCATTAATTCGTAATCATATACCTAGTAGTGTGCGTATTATTGTTCAAATGGCAATCATCGCATCA
TTAGTAATTGTTGTTGACCAAATCTTAAGAGCTTATCTTTACGATATTTCTAAGCAACTGTCTGTTTTTGTCGGTCTGAT
TATTACAAACTGTATTGTAATGGGACGTGCTGAAGCTTTTGCTATGAAATCTAAGCCGTTACCATCTTTTATTGATGGTA
TTGGCAATGGTTTAGGCTATGGTTTTGTTCTTATCACTGTTGCATTTTTCCGTGAGCTATTAGGTTCTGGTAAATTGTTT
GGTGTTGAAGTTCTTCCGTTAGTTTCTAATGGCGGTTGGTATCAACCAAATGGCTTAATGTTACTAGCACCATCAGCATT
CTTCTTAATTGGTTTTATGATTTGGGCTATCCGTATCTTTAAGCCTGAACAAGTAGAAGCGAAGGAGTAA

Upstream 100 bases:

>100_bases
CATTAACAAGTAACGGTGTTCAGCATACGTTTGATTTTTGGCTTGGCGATATGGGTTTCGGTCCTTTCCTTGCTAAAGTG
AAAGCAGGAGACCTTAACTA

Downstream 100 bases:

>100_bases
GGTCGAAATGGAACATTATATTAGTTTGCTTGTAAAATCGATCTTCATCGAGAACATGGCACTTTCATTTTTCTTAGGTA
TGTGTACGTTTCTTGCCGTA

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MNTKDLKKNILAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTIAVMFVTAFSNFFVSLIRNHIPSSVRIIVQMAIIAS
LVIVVDQILRAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSKPLPSFIDGIGNGLGYGFVLITVAFFRELLGSGKLF
GVEVLPLVSNGGWYQPNGLMLLAPSAFFLIGFMIWAIRIFKPEQVEAKE

Sequences:

>Translated_209_residues
MNTKDLKKNILAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTIAVMFVTAFSNFFVSLIRNHIPSSVRIIVQMAIIAS
LVIVVDQILRAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSKPLPSFIDGIGNGLGYGFVLITVAFFRELLGSGKLF
GVEVLPLVSNGGWYQPNGLMLLAPSAFFLIGFMIWAIRIFKPEQVEAKE
>Mature_209_residues
MNTKDLKKNILAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTIAVMFVTAFSNFFVSLIRNHIPSSVRIIVQMAIIAS
LVIVVDQILRAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSKPLPSFIDGIGNGLGYGFVLITVAFFRELLGSGKLF
GVEVLPLVSNGGWYQPNGLMLLAPSAFFLIGFMIWAIRIFKPEQVEAKE

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=34.4827586206897, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22849; Mature: 22849

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKDLKKNILAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTIAVMFVTAFSNFFVSL
CCHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNHIPSSVRIIVQMAIIASLVIVVDQILRAYLYDISKQLSVFVGLIITNCIVMGRAEAF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMKSKPLPSFIDGIGNGLGYGFVLITVAFFRELLGSGKLFGVEVLPLVSNGGWYQPNGLM
HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCEE
LLAPSAFFLIGFMIWAIRIFKPEQVEAKE
EECCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNTKDLKKNILAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTIAVMFVTAFSNFFVSL
CCHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNHIPSSVRIIVQMAIIASLVIVVDQILRAYLYDISKQLSVFVGLIITNCIVMGRAEAF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMKSKPLPSFIDGIGNGLGYGFVLITVAFFRELLGSGKLFGVEVLPLVSNGGWYQPNGLM
HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCEE
LLAPSAFFLIGFMIWAIRIFKPEQVEAKE
EECCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA