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The map label for this gene is nusB

Identifier: 209694495

GI number: 209694495

Start: 1024179

End: 1024646

Strand: Direct

Name: nusB

Synonym: VSAL_I0926

Alternate gene names: 209694495

Gene position: 1024179-1024646 (Clockwise)

Preceding gene: 209694494

Following gene: 209694496

Centisome position: 30.8

GC content: 39.1

Gene sequence:

>468_bases
ATGGGAGTTAGTGTGAAACCAGCCGCACGTCGTAATGCACGTCAATTTGCGCTTCAAGCAATTTATTCATGGCAAATAAG
CAAAGAAAATGTTGCTGCTATTGAAGAACAGTTTTTAACTGCAGATAAGTATGATGAAGAAGAGCATCATGCAAAAGAGC
CTAAACTACAAGCTCCAGAGACAGATGTAGCGTACTTCCGCGATCTTTTCTCAGGTGTTGCTCTTAACCACATTAAGTTA
GACGGTAAAATGCGTCCATACTTATCTCGTCCACTTCAGGATCTTGATCAGATGGAACTTGCGTTATTACGTATGTCTAT
CTATGAAATGATGAATCGTGACGATGTACCTTACAAAGTAGTTATCAATGAAGCGATTGAACTTGCAAAAGTGTTCGCAG
CAGAAGATAGCCACAAATTTGTAAATGGTGTATTAGATAAAGCGGCTCCAACATTACGTAAAAAGTAA

Upstream 100 bases:

>100_bases
AAGCAATCGAGCGCGCCGGTACCAAGGCTGGTAATAAAGGGGCGGAGGCTGCACTAAGCGCACTCGAAATGATTAATGTT
CTGTCTCAAATAGAATCCTA

Downstream 100 bases:

>100_bases
GTTGGAATTAGCATACTAATTAATACTAAAGGTCAGCTAATTGCTGGCCTTTTTTATATCTTAAATACAAGATAAGAATA
CTTAATAATATGACCAGTGA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGVSVKPAARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFRDLFSGVALNHIKL
DGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK

Sequences:

>Translated_155_residues
MGVSVKPAARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFRDLFSGVALNHIKL
DGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
>Mature_154_residues
GVSVKPAARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFRDLFSGVALNHIKLD
GKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=149, Percent_Identity=57.7181208053691, Blast_Score=156, Evalue=7e-40,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_ALISL (B6EIA0)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262423.1
- GeneID:   6989101
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0926
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17752; Mature: 17620

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSVKPAARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCC
TDVAYFRDLFSGVALNHIKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKV
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVSVKPAARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPE
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCC
TDVAYFRDLFSGVALNHIKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKV
HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA