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The map label for this gene is ybhD [H]

Identifier: 209694455

GI number: 209694455

Start: 981768

End: 982646

Strand: Direct

Name: ybhD [H]

Synonym: VSAL_I0879

Alternate gene names: 209694455

Gene position: 981768-982646 (Clockwise)

Preceding gene: 209694442

Following gene: 209694456

Centisome position: 29.53

GC content: 40.05

Gene sequence:

>879_bases
ATGAGCATTAAATTACAACAATTAAAACATTTTACTTTAGTCGTAGAAGAAGGCGGGTTTCGTGCCGCCTCTGGCCGTGC
AAATCGATCGCAAGCCGCACTATCAACCTCAATTAAAGAACTCGAACGAATTTTAGAACAACCTTTATTTGAAGCCGGAA
ACAAATCAAAACTAACGCCTTTTGGTGAAATTTGCTTTCCAAAAATAACTCAGTTTTTAGACGTCTATGACCGACTCACT
AATGATTTACGTGCGGATGCCGCAGGACAACAAGGACGCGTTCGGATTGCCAGTGTTCCTTCTGTTGCCGCAAAATTAAT
CCCGAGTGTGCTAGGCGCATTCAGTGAAAAATACCCTAACGTAGAAGTCAGCCTAATTGATGACAATGCCGCAGGTGTAG
AAGCTCGCCTACTGTCAGGAGAGGTCGATTTAGCGCTAGGAAATTATTCACAATTGGAAGAAAAAGCCATTCACTTTACC
CCGTTGATAAGCGATCCTATTGGTGTTGTCTGCTTAAAAGACAATCCTATCGCCACTCATCCTGAAGGGATCGAATGGAA
AACATTACTTAAACAAACTTTCATTAGAAACGGAACTTGTACATTGCTTAACTCAACACCAGCTCGAGTACTCAGTGAGC
AAGCCTTATATTCTGTTGAAAACATTACTTCTTTATTTTCAATATTAGAATTAGGAATAGGAATAACGACACTTCCGAAA
TTAGCCTTCCCAACCAATGAGACTCGTTTAGTGTGGATCCCTCTTATCGATCCTCCATTAGAGCGACAAATTGGCATATT
TCAACTCGCTGATAGAACTATTTCGCCACAAGCACAGCAGTTTTATGATCTTTGCATTCAATATTTAAATTATAAATAA

Upstream 100 bases:

>100_bases
AGATGATAAATCTAACGGTAAATTTATTACGTTCGATAAGAAAAACTTATCACTCTAGTGAGAGTTCGATAAATAAAGGG
CTAACAAGGCGGTCGATAAA

Downstream 100 bases:

>100_bases
CAATTTATTATTTTCATATAACAGAGATAACTAAATATATTATTAAGTGAATAAGATCACAACATTCATTTCTCATGGTT
ATATTTTATAAATAAATCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSIKLQQLKHFTLVVEEGGFRAASGRANRSQAALSTSIKELERILEQPLFEAGNKSKLTPFGEICFPKITQFLDVYDRLT
NDLRADAAGQQGRVRIASVPSVAAKLIPSVLGAFSEKYPNVEVSLIDDNAAGVEARLLSGEVDLALGNYSQLEEKAIHFT
PLISDPIGVVCLKDNPIATHPEGIEWKTLLKQTFIRNGTCTLLNSTPARVLSEQALYSVENITSLFSILELGIGITTLPK
LAFPTNETRLVWIPLIDPPLERQIGIFQLADRTISPQAQQFYDLCIQYLNYK

Sequences:

>Translated_292_residues
MSIKLQQLKHFTLVVEEGGFRAASGRANRSQAALSTSIKELERILEQPLFEAGNKSKLTPFGEICFPKITQFLDVYDRLT
NDLRADAAGQQGRVRIASVPSVAAKLIPSVLGAFSEKYPNVEVSLIDDNAAGVEARLLSGEVDLALGNYSQLEEKAIHFT
PLISDPIGVVCLKDNPIATHPEGIEWKTLLKQTFIRNGTCTLLNSTPARVLSEQALYSVENITSLFSILELGIGITTLPK
LAFPTNETRLVWIPLIDPPLERQIGIFQLADRTISPQAQQFYDLCIQYLNYK
>Mature_291_residues
SIKLQQLKHFTLVVEEGGFRAASGRANRSQAALSTSIKELERILEQPLFEAGNKSKLTPFGEICFPKITQFLDVYDRLTN
DLRADAAGQQGRVRIASVPSVAAKLIPSVLGAFSEKYPNVEVSLIDDNAAGVEARLLSGEVDLALGNYSQLEEKAIHFTP
LISDPIGVVCLKDNPIATHPEGIEWKTLLKQTFIRNGTCTLLNSTPARVLSEQALYSVENITSLFSILELGIGITTLPKL
AFPTNETRLVWIPLIDPPLERQIGIFQLADRTISPQAQQFYDLCIQYLNYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=299, Percent_Identity=29.0969899665552, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=28, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=23.8754325259516, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=24.2647058823529, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788887, Length=263, Percent_Identity=26.2357414448669, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87081904, Length=190, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=26.6393442622951, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32255; Mature: 32124

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLQQLKHFTLVVEEGGFRAASGRANRSQAALSTSIKELERILEQPLFEAGNKSKLTP
CCCCHHHHCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGEICFPKITQFLDVYDRLTNDLRADAAGQQGRVRIASVPSVAAKLIPSVLGAFSEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLSGEVDLALGNYSQLEEKAIHFTPLISDPIGVVCLKDNPIATH
EEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHEECEECCCCCEEEEECCCCCCCC
PEGIEWKTLLKQTFIRNGTCTLLNSTPARVLSEQALYSVENITSLFSILELGIGITTLPK
CCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
LAFPTNETRLVWIPLIDPPLERQIGIFQLADRTISPQAQQFYDLCIQYLNYK
CCCCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIKLQQLKHFTLVVEEGGFRAASGRANRSQAALSTSIKELERILEQPLFEAGNKSKLTP
CCCHHHHCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FGEICFPKITQFLDVYDRLTNDLRADAAGQQGRVRIASVPSVAAKLIPSVLGAFSEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVSLIDDNAAGVEARLLSGEVDLALGNYSQLEEKAIHFTPLISDPIGVVCLKDNPIATH
EEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHEECEECCCCCEEEEECCCCCCCC
PEGIEWKTLLKQTFIRNGTCTLLNSTPARVLSEQALYSVENITSLFSILELGIGITTLPK
CCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
LAFPTNETRLVWIPLIDPPLERQIGIFQLADRTISPQAQQFYDLCIQYLNYK
CCCCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]