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The map label for this gene is yabJ [H]

Identifier: 209694454

GI number: 209694454

Start: 981216

End: 981599

Strand: Reverse

Name: yabJ [H]

Synonym: VSAL_I0878

Alternate gene names: 209694454

Gene position: 981599-981216 (Counterclockwise)

Preceding gene: 209694457

Following gene: 209694453

Centisome position: 29.52

GC content: 42.19

Gene sequence:

>384_bases
ATGAAAAAGCATTCAGTAAAAACCGATTTATTTGCCTCTAAAGCGCCTCTTGAGTGGGCAATTGTTAACAACGGCACGCT
ATATACGGCTCAAATTCCGATTGATCAATCAGGCGCGGTCGTTGAGGGAGGGATTGAAGCGCAAACTCACCAAACGTTTA
AAAACTTAGTACACACTTTGGAATGTGCAGGAGAGTCGTTAGATTCTGTACTTCAAGTATTGATTTATGTGACTGACAGA
GCGTACTTAGCAACCGTAAATAAAGTGTACGCAGAATACTTTAATGCCCCTTATCCAAACCGTGCAGCAATGATTGTTGC
GGGGTTAGCTCGCGAAGAAATGTTGGTTGAATTTGTTGTGTATGCAGCGGTTGAACCAAAATAG

Upstream 100 bases:

>100_bases
ACGTAATAAATTTACCGTTAGATTTATCATCTGTCAATGTGCAATATTTAACCGTATTGAAACATTGTGATTACATGACG
AATGAGAGCGTGAGACTAAA

Downstream 100 bases:

>100_bases
CGGGAAAGTAGTTTTGATTAAATTTGTATAAACATCATTTATTGCCAGACTTAAAGGCAGTGGATCTCAGAGACAAGGAA
AGTAGCATGACAGTTCAAGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKKHSVKTDLFASKAPLEWAIVNNGTLYTAQIPIDQSGAVVEGGIEAQTHQTFKNLVHTLECAGESLDSVLQVLIYVTDR
AYLATVNKVYAEYFNAPYPNRAAMIVAGLAREEMLVEFVVYAAVEPK

Sequences:

>Translated_127_residues
MKKHSVKTDLFASKAPLEWAIVNNGTLYTAQIPIDQSGAVVEGGIEAQTHQTFKNLVHTLECAGESLDSVLQVLIYVTDR
AYLATVNKVYAEYFNAPYPNRAAMIVAGLAREEMLVEFVVYAAVEPK
>Mature_127_residues
MKKHSVKTDLFASKAPLEWAIVNNGTLYTAQIPIDQSGAVVEGGIEAQTHQTFKNLVHTLECAGESLDSVLQVLIYVTDR
AYLATVNKVYAEYFNAPYPNRAAMIVAGLAREEMLVEFVVYAAVEPK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71982068, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320899, Length=88, Percent_Identity=38.6363636363636, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13977; Mature: 13977

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHSVKTDLFASKAPLEWAIVNNGTLYTAQIPIDQSGAVVEGGIEAQTHQTFKNLVHTL
CCCCCCCHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHH
ECAGESLDSVLQVLIYVTDRAYLATVNKVYAEYFNAPYPNRAAMIVAGLAREEMLVEFVV
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHHH
YAAVEPK
HHHCCCC
>Mature Secondary Structure
MKKHSVKTDLFASKAPLEWAIVNNGTLYTAQIPIDQSGAVVEGGIEAQTHQTFKNLVHTL
CCCCCCCHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHH
ECAGESLDSVLQVLIYVTDRAYLATVNKVYAEYFNAPYPNRAAMIVAGLAREEMLVEFVV
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHHHH
YAAVEPK
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]