| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694443
Identifier: 209694443
GI number: 209694443
Start: 967429
End: 967755
Strand: Reverse
Name: 209694443
Synonym: VSAL_I0866
Alternate gene names: NA
Gene position: 967755-967429 (Counterclockwise)
Preceding gene: 209694444
Following gene: 209694441
Centisome position: 29.1
GC content: 41.59
Gene sequence:
>327_bases ATGAAAAAATTATTCGCTTTGGCTGCTGTGATGACGCTTGCTGGTTGTTCGACGACGATGCCAGATATGGGAACGGCACA ACCCGTGCACTATACGTGCGAAGCAGGACGTAATTTTCAAATAACATTTAATGACGATAACGCGTTACTGCAATTACCAA AAGAAGATTATGCATTAAAAAGAGCAGTATCAGCATCAGGGATGAAATACATTTCAGATGATGGAATGCCTGATGTGAGT AAGACGATTGTCTTTCATGGGAAGGGGGATTCTGCAATTCTTGAGTTAGGTCGCGTTGTTCTTAAAGAGTGCACCGTAAT ACAGTAA
Upstream 100 bases:
>100_bases CTGTTATTTAACGGATGAGTTGAATAAATATCTATTTTGAACCCTCTTTTTTGAGTTCATTTATTCTATAATCAGTAAAA ATAAAACGATTGAGGAAGGT
Downstream 100 bases:
>100_bases TTGTTGGATCTGAAAATGGCCACGTAGTTGACATTACATGGCCATTTCATGTCACTTTTGTTTATGAGGAAACTACGACC CGTAAGTCACAATATAACGA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MKKLFALAAVMTLAGCSTTMPDMGTAQPVHYTCEAGRNFQITFNDDNALLQLPKEDYALKRAVSASGMKYISDDGMPDVS KTIVFHGKGDSAILELGRVVLKECTVIQ
Sequences:
>Translated_108_residues MKKLFALAAVMTLAGCSTTMPDMGTAQPVHYTCEAGRNFQITFNDDNALLQLPKEDYALKRAVSASGMKYISDDGMPDVS KTIVFHGKGDSAILELGRVVLKECTVIQ >Mature_108_residues MKKLFALAAVMTLAGCSTTMPDMGTAQPVHYTCEAGRNFQITFNDDNALLQLPKEDYALKRAVSASGMKYISDDGMPDVS KTIVFHGKGDSAILELGRVVLKECTVIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11702; Mature: 11702
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFALAAVMTLAGCSTTMPDMGTAQPVHYTCEAGRNFQITFNDDNALLQLPKEDYALK CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHHH RAVSASGMKYISDDGMPDVSKTIVFHGKGDSAILELGRVVLKECTVIQ HHHCCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKLFALAAVMTLAGCSTTMPDMGTAQPVHYTCEAGRNFQITFNDDNALLQLPKEDYALK CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCHHHHHH RAVSASGMKYISDDGMPDVSKTIVFHGKGDSAILELGRVVLKECTVIQ HHHCCCCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA