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The map label for this gene is rpoZ

Identifier: 209693824

GI number: 209693824

Start: 251679

End: 251951

Strand: Direct

Name: rpoZ

Synonym: VSAL_I0211

Alternate gene names: 209693824

Gene position: 251679-251951 (Clockwise)

Preceding gene: 209693823

Following gene: 209693825

Centisome position: 7.57

GC content: 46.15

Gene sequence:

>273_bases
ATGGCACGTGTAACCGTTCAAGACACAGTTGAGAAAATCGGCAACCGTTTCGACCTTGTTTTAGTATCATCTCGTCGCGC
ACGCCAACTACAAACTGGCGGTAAAGATGCGCTAGTGCCTGAAGAGAACGATAAACCAACTGTTATCGCTCTTCGTGAAA
TCGAAGAAGGCCTGATCACAAAAGATCTACTTGATGCTCGTGAACGTCAAGAGCAACAAGAGCAAGATGCCGCTGAACTA
GCAGCAGTAAGCTCAATCACACACAATCGTTAA

Upstream 100 bases:

>100_bases
TGACTATTTTATCTATCAAGAGTATTCGTATCTAGAAAGTTAGCACTGATACTTGTATAATTTCTCGTCATATAATATTT
TTAACATTTTTGGAGTCCTC

Downstream 100 bases:

>100_bases
TCGCTATTATTTATCTTTAAGTAGATAAATACGCGTTAATAATAAGCAAACCTGACGGGGCGAAATTTGGATTTATTCGA
TAGCCTGAAAGATGTTGCCA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLITKDLLDARERQEQQEQDAAEL
AAVSSITHNR

Sequences:

>Translated_90_residues
MARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLITKDLLDARERQEQQEQDAAEL
AAVSSITHNR
>Mature_89_residues
ARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLITKDLLDARERQEQQEQDAAELA
AVSSITHNR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=90, Percent_Identity=78.8888888888889, Blast_Score=111, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ALISL (B6EPJ3)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002261752.1
- GeneID:   6988614
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0211
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10082; Mature: 9951

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLIT
CCCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCHHH
KDLLDARERQEQQEQDAAELAAVSSITHNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLIT
CCCCHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCHHH
KDLLDARERQEQQEQDAAELAAVSSITHNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA