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The map label for this gene is yhgF [H]

Identifier: 209693812

GI number: 209693812

Start: 236541

End: 238877

Strand: Direct

Name: yhgF [H]

Synonym: VSAL_I0197

Alternate gene names: 209693812

Gene position: 236541-238877 (Clockwise)

Preceding gene: 209693811

Following gene: 209693815

Centisome position: 7.11

GC content: 44.24

Gene sequence:

>2337_bases
ATGATAATAAATATAATTGCCAAAGAACTTAACGTTCGCCCTCAACAAGTTGCCGCTGCTGTTCAATTGATTGACGAAGG
CAGCACGATTCCATTTATTGCTCGTTACCGTAAAGAAGTAACTGAAGGTTTGGACGATACTCAACTTCGTACGCTAGACA
CGCGTTTAACTTACTTACGAGAGTTGGATGATCGTCGTAAATCAATTCTAAAATCAATCAAAGAACAAGAAAAACTGACG
CCTGAACTAGAGCGTGAAATTTTAGATGCCGACAGCAAAACTCGTCTTGAAGATTTGTACTTACCCTTCAAACGTAAGCG
TCGAACTAAAGGTCAAATTGCAATTGAAGCAGGAATTGAACCGCTGGCTGATTTGTTGTGGACACGTCCTGAAAATACCC
CTGAAGAGGCGGCTCAATCGTATATTAATGCCGATAATGGCTTTGCTGATACCAAAGCGGTATTAGACGGCGCTCGTGCA
ATCTTGATGGAACGTATGGCTGAAGATGCCAACTTACTAGAGAAAGTACGTAACTACTTAACCAGTAACGCTGAACTGTC
CTCTAAAATGGTTGATGGCCAAGAGCACACAGGCGAGAAGTTTAAAGATTACTTTGAACATAATGAAAAGTTAACGCGTG
TTCCTTCTCACCGTGCGCTTGCGATGCTTCGTGGTCGTAATGAAGGTTTTTTACAGCTTTCTATTAATGCCGATCCAAAT
CAAGAAGAAGGCGTTCGTGGCTCTTACTGTGAAATCATCATCGCCAATCATTATGGCGTTACTTTAGGATCTCAACCTGC
GGATTTATGGCGTAAACAAGTGATTAGCTGGACATGGCGCATCAAGATTTTAATGCACATGGAAACCGAGTTAATGGGCG
CATTAAAAGAGCGCTCTGAAGATGAAGCGATTGATGTATTTGCCACTAACCTTAAAGACTTATTAATGGCGGCACCTGCG
GGTCTGAAAACGACACTAGGTTTAGATCCTGGTTTACGTACCGGCACTAAAGTCGCAGTGGTTGATGCAACGGGTAAAGT
GTTAGCAACAGATACCATTTATCAAAACCAACCTCACAATAAAACAGCGCAATCTGCACAGATTATCGAAACCTTAATCA
AACGTCACAATGTCGATTTGATTGCGATTGGTAATGGTACGGCTTCACGCGAGACCGATGCCTTTGTGGGTGATTTACTG
AAAAAATCAGGCTTGTCTGCAACCAAAATTATCGTGAGTGAAGCCGGTGCATCTGTGTACTCGGCCTCTGAACTCGCAGC
AAAAGAATTCCCCGATTTAGATGTGTCTATTCGTGGTGCAGTATCTATCGCTCGTCGCTTGCAAGATCCACTGGCAGAGC
TGGTTAAAATTGACCCGAAAGCGATTGGTGTTGGTCAATATCAACATGACGTTAGCCAAAGCCAATTAGCGAAGAAGCTA
GATGCAGTTATTGAAGACTGTGTAAATGCCGTCGGTGTTGATGTAAATACCGCATCGTCTGCATTATTGACCCGTGTTGC
TGGTTTATCGACGACGATCGCACAAAATATTGTTGATTACCGTGATGAAAATGGTCGCTTTGAAAACCGTATTACATTGA
AAAAAGTCGCACGTTTAGGGCCAAAAGCGTTTGAACAGTGTGCTGGTTTCTTACGTGTGATGAATGGTAAAAACCCATTA
GATGCCTCAGCGGTTCACCCTGAAGCGTATCCTGTAGTGAAAACCATTGCGGAGAAAAACGGCAAAGCCATTGATGCGAT
TATTGGTAATACTGAATTTTTACGTTCTGTCTCTGCGAATGATTACATCAGTGCTGATTTTGGTCTACCTACCGTCACTG
ACATCATTTCTGAGCTTGATAAACCGGGTCGAGATCCTCGTCCTGAGTTTAAAACGGCGACCTTTGCTGATGGCGTAAAC
ACGGTATCCGATCTTGAATTAGGCATGATATTGGAAGGCGTGGTATCTAACGTGGCGAACTTTGGTGCGTTTGTGGATAT
CGGTGTTCACCAAGATGGTTTGGTTCATATCTCGGCACTAAGCGATACGTTTGTCTCTGACCCACGTGAAGTGGTTAAAG
CCGGTGATATCGTGAAAGTGAAAGTCATGGAAGTGGACGCGCAACGTAAGCGTATCGCCCTGACTATGCGCTTGAATGAT
CAGCCAGGGGAAGATACTCGTCCTCAGCGCCAATCAAATCAACCACAGCAGCGTAATGAGCGTACTCAAGCGCCAAGACC
TTCCTCTTCTGCAAGACAGCAACGTTCGAATAATGATGTTGGTAATGCGGCGATGGGTGGTGCGTTTGCTGCGGCGTTTG
CGAAGGCTAAGAAGTAA

Upstream 100 bases:

>100_bases
CCATACATGCTCTTATAGTTTCTAGTTAGTGAAACGTATAGTCTCTAGTTAAAACAAACAGCCTCATCACACGCTTTTAA
TTAATTAAAAAAGAATCAAA

Downstream 100 bases:

>100_bases
AAATTTGGAACGCGAAGCTAGAAACTATACGCTTCGCTGACTAGAAACTATAAGAGCGTGTATAGCTAGCGTGGTGATAA
CTTAGGTTTCAGGGCGCTAC

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MIINIIAKELNVRPQQVAAAVQLIDEGSTIPFIARYRKEVTEGLDDTQLRTLDTRLTYLRELDDRRKSILKSIKEQEKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTRPENTPEEAAQSYINADNGFADTKAVLDGARA
ILMERMAEDANLLEKVRNYLTSNAELSSKMVDGQEHTGEKFKDYFEHNEKLTRVPSHRALAMLRGRNEGFLQLSINADPN
QEEGVRGSYCEIIIANHYGVTLGSQPADLWRKQVISWTWRIKILMHMETELMGALKERSEDEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYQNQPHNKTAQSAQIIETLIKRHNVDLIAIGNGTASRETDAFVGDLL
KKSGLSATKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASSALLTRVAGLSTTIAQNIVDYRDENGRFENRITLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVSANDYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVN
TVSDLELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRKRIALTMRLND
QPGEDTRPQRQSNQPQQRNERTQAPRPSSSARQQRSNNDVGNAAMGGAFAAAFAKAKK

Sequences:

>Translated_778_residues
MIINIIAKELNVRPQQVAAAVQLIDEGSTIPFIARYRKEVTEGLDDTQLRTLDTRLTYLRELDDRRKSILKSIKEQEKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTRPENTPEEAAQSYINADNGFADTKAVLDGARA
ILMERMAEDANLLEKVRNYLTSNAELSSKMVDGQEHTGEKFKDYFEHNEKLTRVPSHRALAMLRGRNEGFLQLSINADPN
QEEGVRGSYCEIIIANHYGVTLGSQPADLWRKQVISWTWRIKILMHMETELMGALKERSEDEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYQNQPHNKTAQSAQIIETLIKRHNVDLIAIGNGTASRETDAFVGDLL
KKSGLSATKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASSALLTRVAGLSTTIAQNIVDYRDENGRFENRITLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVSANDYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVN
TVSDLELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRKRIALTMRLND
QPGEDTRPQRQSNQPQQRNERTQAPRPSSSARQQRSNNDVGNAAMGGAFAAAFAKAKK
>Mature_778_residues
MIINIIAKELNVRPQQVAAAVQLIDEGSTIPFIARYRKEVTEGLDDTQLRTLDTRLTYLRELDDRRKSILKSIKEQEKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTRPENTPEEAAQSYINADNGFADTKAVLDGARA
ILMERMAEDANLLEKVRNYLTSNAELSSKMVDGQEHTGEKFKDYFEHNEKLTRVPSHRALAMLRGRNEGFLQLSINADPN
QEEGVRGSYCEIIIANHYGVTLGSQPADLWRKQVISWTWRIKILMHMETELMGALKERSEDEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYQNQPHNKTAQSAQIIETLIKRHNVDLIAIGNGTASRETDAFVGDLL
KKSGLSATKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASSALLTRVAGLSTTIAQNIVDYRDENGRFENRITLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVSANDYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVN
TVSDLELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRKRIALTMRLND
QPGEDTRPQRQSNQPQQRNERTQAPRPSSSARQQRSNNDVGNAAMGGAFAAAFAKAKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=794, Percent_Identity=33.375314861461, Blast_Score=400, Evalue=1e-111,
Organism=Homo sapiens, GI27597090, Length=730, Percent_Identity=24.5205479452055, Blast_Score=115, Evalue=2e-25,
Organism=Escherichia coli, GI87082262, Length=764, Percent_Identity=68.3246073298429, Blast_Score=1045, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=84, Percent_Identity=40.4761904761905, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=739, Percent_Identity=28.4167794316644, Blast_Score=222, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI17552892, Length=316, Percent_Identity=25.9493670886076, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI62484314, Length=783, Percent_Identity=32.8224776500639, Blast_Score=364, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24640080, Length=187, Percent_Identity=28.3422459893048, Blast_Score=76, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85441; Mature: 85441

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINIIAKELNVRPQQVAAAVQLIDEGSTIPFIARYRKEVTEGLDDTQLRTLDTRLTYLR
CEEEEEHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ELDDRRKSILKSIKEQEKLTPELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEEECCCH
PLADLLWTRPENTPEEAAQSYINADNGFADTKAVLDGARAILMERMAEDANLLEKVRNYL
HHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSNAELSSKMVDGQEHTGEKFKDYFEHNEKLTRVPSHRALAMLRGRNEGFLQLSINADPN
CCCCHHHHHHCCCCHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEEEEECCCCC
QEEGVRGSYCEIIIANHYGVTLGSQPADLWRKQVISWTWRIKILMHMETELMGALKERSE
CCCCCCCCEEEEEEECCCCEECCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCC
DEAIDVFATNLKDLLMAAPAGLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYQNQPHN
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEECHHHCCCCCC
KTAQSAQIIETLIKRHNVDLIAIGNGTASRETDAFVGDLLKKSGLSATKIIVSEAGASVY
CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
SASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHH
DAVIEDCVNAVGVDVNTASSALLTRVAGLSTTIAQNIVDYRDENGRFENRITLKKVARLG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
PKAFEQCAGFLRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVSAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCC
DYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVNTVSDLELGMILEGVVSNVAN
CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
FGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRKRIALTMRLND
CCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECC
QPGEDTRPQRQSNQPQQRNERTQAPRPSSSARQQRSNNDVGNAAMGGAFAAAFAKAKK
CCCCCCCCCHHCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIINIIAKELNVRPQQVAAAVQLIDEGSTIPFIARYRKEVTEGLDDTQLRTLDTRLTYLR
CEEEEEHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ELDDRRKSILKSIKEQEKLTPELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEEECCCH
PLADLLWTRPENTPEEAAQSYINADNGFADTKAVLDGARAILMERMAEDANLLEKVRNYL
HHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSNAELSSKMVDGQEHTGEKFKDYFEHNEKLTRVPSHRALAMLRGRNEGFLQLSINADPN
CCCCHHHHHHCCCCHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEEEEECCCCC
QEEGVRGSYCEIIIANHYGVTLGSQPADLWRKQVISWTWRIKILMHMETELMGALKERSE
CCCCCCCCEEEEEEECCCCEECCCCHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCC
DEAIDVFATNLKDLLMAAPAGLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYQNQPHN
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEECHHHCCCCCC
KTAQSAQIIETLIKRHNVDLIAIGNGTASRETDAFVGDLLKKSGLSATKIIVSEAGASVY
CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
SASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHH
DAVIEDCVNAVGVDVNTASSALLTRVAGLSTTIAQNIVDYRDENGRFENRITLKKVARLG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
PKAFEQCAGFLRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVSAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCC
DYISADFGLPTVTDIISELDKPGRDPRPEFKTATFADGVNTVSDLELGMILEGVVSNVAN
CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
FGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDAQRKRIALTMRLND
CCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECC
QPGEDTRPQRQSNQPQQRNERTQAPRPSSSARQQRSNNDVGNAAMGGAFAAAFAKAKK
CCCCCCCCCHHCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]