Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693755

Identifier: 209693755

GI number: 209693755

Start: 167877

End: 169328

Strand: Direct

Name: 209693755

Synonym: VSAL_I0133

Alternate gene names: NA

Gene position: 167877-169328 (Clockwise)

Preceding gene: 209693754

Following gene: 209693756

Centisome position: 5.05

GC content: 37.33

Gene sequence:

>1452_bases
ATGATAGGCGCCTTACTTCCATTAAATGTAAATGCCAACTCATGCAAAATCGAAGGTTACACCATCGGCTTTTTTAATGG
GGTTGCGACGACGAAGAAAGATGCTGAACGTGGGCGAGATAAAATCAAATCTACTCTTGATATCACTCAATACAACGGTG
AAAAAGTGGAGTACCAACTTTTCTATAACGATTCTTACATTGAAAGTAATGGCTTTAACGTACTGGCTGATTTCGCCGAA
ACCTTTGACCAAAGAACTCAAGAGCTAGAGCAAAAACAATTTGACCGATGGGAAGCGTTTTGGGATATCGTTAACGGCAA
GCAAGATAGCTCTATCATCAAAAAAATCAGTGCTGCATTTTCTTGGTTTGGGGGGTTTTTTACTGACTTCAACAGTCAAC
GTTCCAATATCATCATCCGCGAATTTCTAGAATTATTAACCCTATCGGTTGATTCTCCAGATACAGCAAAGACTCAGATG
CAGCATAAGCTCATCAATGATTCCAATACATGGCAAGGGAAAAAGCTGATTTATATTGCCCATTCTCAAGGAAACTTATG
GGTAAATAAATCGTACAACTATGTTGTGTCTCAATTAGGTTATGATGCAAGTAATATTCATGTCGTTCATATCGCGCCAG
CCTCTCCAACATTAAGTCCTAATAGCGATTACATTTTATCTAGCTCAGACCTTGTCATTAACGGATTAAATTTTACAGGG
GTGGGCTCAGTGCCTCCATTTAACACAATAATTGCACCTAGTTCTTCTGACATTGCAGGACATGGTTTAATTGAGGTTTA
TTTAACTCACCCTAAATCGATACAAAAAATAAAATCCGCTACGGATAAAGCATTCGCATCACTCACCAAACCAGACATGG
AGGATGTACTGTTTTCAATTGATTATAATTACACCCCCACTTTTTCTGAAAGCCATGCTTCACCAGAAATTGAATTTGTT
GATAATAATAACAATTGGGTAAAGAGAACGGACATTTATTCAGAGATCTCTTACTTACAAAGAGCAGATCCAAACGAAAA
TAAATATGAGCTGAATCCCGCCAAAGATTTTGAACCACTTTCATTCATACATAATAAGAAGGACAGAGAGAGTCAAGTAA
TAAGCATAGATCAATGCTCTGACATACCAAACAATGACCCCTTCATATTGGGAGAGCAATCTAACGAAACCATAAGATAC
GCATGGGATAAGGTGCCACCAAATACGAAGGTATCGGTTACGGTCAGAGATAGATATGGTGTGAAGTTACAAAATGACGA
AGTATCTATCAATGAACTTCGTCCTAGAGGACATACTTATCAGGGGATTTTTATTGATCTAAACGCAATTAACCCTTACA
CAAAAGAAGAAAAAGCATTTATAAAACAACAAAAGCTAGAGACTAAATACGAACTTTATTCAGACTCAATTCTATTTTCT
ATCTCATCTTAA

Upstream 100 bases:

>100_bases
ACCATGGCCTACCTTGCTTATAATCATTTACAAGATGGCGCAGTAAGTACCTCTCTGAATGCAGAGGCACAATACTGTGA
ATAAACTAACCGTATCGCTC

Downstream 100 bases:

>100_bases
TCTCTCCTCATTTTGTATGGTCAACTTTAGTTAAGTGGGCCGTTATTACGTAACAATAATTAACTTTCCTATTTATTCAC
TTTTCTTCTTATTTAATTAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MIGALLPLNVNANSCKIEGYTIGFFNGVATTKKDAERGRDKIKSTLDITQYNGEKVEYQLFYNDSYIESNGFNVLADFAE
TFDQRTQELEQKQFDRWEAFWDIVNGKQDSSIIKKISAAFSWFGGFFTDFNSQRSNIIIREFLELLTLSVDSPDTAKTQM
QHKLINDSNTWQGKKLIYIAHSQGNLWVNKSYNYVVSQLGYDASNIHVVHIAPASPTLSPNSDYILSSSDLVINGLNFTG
VGSVPPFNTIIAPSSSDIAGHGLIEVYLTHPKSIQKIKSATDKAFASLTKPDMEDVLFSIDYNYTPTFSESHASPEIEFV
DNNNNWVKRTDIYSEISYLQRADPNENKYELNPAKDFEPLSFIHNKKDRESQVISIDQCSDIPNNDPFILGEQSNETIRY
AWDKVPPNTKVSVTVRDRYGVKLQNDEVSINELRPRGHTYQGIFIDLNAINPYTKEEKAFIKQQKLETKYELYSDSILFS
ISS

Sequences:

>Translated_483_residues
MIGALLPLNVNANSCKIEGYTIGFFNGVATTKKDAERGRDKIKSTLDITQYNGEKVEYQLFYNDSYIESNGFNVLADFAE
TFDQRTQELEQKQFDRWEAFWDIVNGKQDSSIIKKISAAFSWFGGFFTDFNSQRSNIIIREFLELLTLSVDSPDTAKTQM
QHKLINDSNTWQGKKLIYIAHSQGNLWVNKSYNYVVSQLGYDASNIHVVHIAPASPTLSPNSDYILSSSDLVINGLNFTG
VGSVPPFNTIIAPSSSDIAGHGLIEVYLTHPKSIQKIKSATDKAFASLTKPDMEDVLFSIDYNYTPTFSESHASPEIEFV
DNNNNWVKRTDIYSEISYLQRADPNENKYELNPAKDFEPLSFIHNKKDRESQVISIDQCSDIPNNDPFILGEQSNETIRY
AWDKVPPNTKVSVTVRDRYGVKLQNDEVSINELRPRGHTYQGIFIDLNAINPYTKEEKAFIKQQKLETKYELYSDSILFS
ISS
>Mature_483_residues
MIGALLPLNVNANSCKIEGYTIGFFNGVATTKKDAERGRDKIKSTLDITQYNGEKVEYQLFYNDSYIESNGFNVLADFAE
TFDQRTQELEQKQFDRWEAFWDIVNGKQDSSIIKKISAAFSWFGGFFTDFNSQRSNIIIREFLELLTLSVDSPDTAKTQM
QHKLINDSNTWQGKKLIYIAHSQGNLWVNKSYNYVVSQLGYDASNIHVVHIAPASPTLSPNSDYILSSSDLVINGLNFTG
VGSVPPFNTIIAPSSSDIAGHGLIEVYLTHPKSIQKIKSATDKAFASLTKPDMEDVLFSIDYNYTPTFSESHASPEIEFV
DNNNNWVKRTDIYSEISYLQRADPNENKYELNPAKDFEPLSFIHNKKDRESQVISIDQCSDIPNNDPFILGEQSNETIRY
AWDKVPPNTKVSVTVRDRYGVKLQNDEVSINELRPRGHTYQGIFIDLNAINPYTKEEKAFIKQQKLETKYELYSDSILFS
ISS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54861; Mature: 54861

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGALLPLNVNANSCKIEGYTIGFFNGVATTKKDAERGRDKIKSTLDITQYNGEKVEYQL
CCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCEEEEEE
FYNDSYIESNGFNVLADFAETFDQRTQELEQKQFDRWEAFWDIVNGKQDSSIIKKISAAF
EECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SWFGGFFTDFNSQRSNIIIREFLELLTLSVDSPDTAKTQMQHKLINDSNTWQGKKLIYIA
HHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
HSQGNLWVNKSYNYVVSQLGYDASNIHVVHIAPASPTLSPNSDYILSSSDLVINGLNFTG
ECCCCEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCCCC
VGSVPPFNTIIAPSSSDIAGHGLIEVYLTHPKSIQKIKSATDKAFASLTKPDMEDVLFSI
CCCCCCCCEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHEEEEE
DYNYTPTFSESHASPEIEFVDNNNNWVKRTDIYSEISYLQRADPNENKYELNPAKDFEPL
ECCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH
SFIHNKKDRESQVISIDQCSDIPNNDPFILGEQSNETIRYAWDKVPPNTKVSVTVRDRYG
HHHHCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
VKLQNDEVSINELRPRGHTYQGIFIDLNAINPYTKEEKAFIKQQKLETKYELYSDSILFS
CEEECCCEEHHHCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCEEEEE
ISS
ECC
>Mature Secondary Structure
MIGALLPLNVNANSCKIEGYTIGFFNGVATTKKDAERGRDKIKSTLDITQYNGEKVEYQL
CCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCEEEEEE
FYNDSYIESNGFNVLADFAETFDQRTQELEQKQFDRWEAFWDIVNGKQDSSIIKKISAAF
EECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SWFGGFFTDFNSQRSNIIIREFLELLTLSVDSPDTAKTQMQHKLINDSNTWQGKKLIYIA
HHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
HSQGNLWVNKSYNYVVSQLGYDASNIHVVHIAPASPTLSPNSDYILSSSDLVINGLNFTG
ECCCCEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCCCC
VGSVPPFNTIIAPSSSDIAGHGLIEVYLTHPKSIQKIKSATDKAFASLTKPDMEDVLFSI
CCCCCCCCEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHEEEEE
DYNYTPTFSESHASPEIEFVDNNNNWVKRTDIYSEISYLQRADPNENKYELNPAKDFEPL
ECCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH
SFIHNKKDRESQVISIDQCSDIPNNDPFILGEQSNETIRYAWDKVPPNTKVSVTVRDRYG
HHHHCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
VKLQNDEVSINELRPRGHTYQGIFIDLNAINPYTKEEKAFIKQQKLETKYELYSDSILFS
CEEECCCEEHHHCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCEEEEE
ISS
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA