Click here to switch to the map view.

The map label for this gene is pecM [H]

Identifier: 209551854

GI number: 209551854

Start: 4457543

End: 4458454

Strand: Direct

Name: pecM [H]

Synonym: Rleg2_4286

Alternate gene names: 209551854

Gene position: 4457543-4458454 (Clockwise)

Preceding gene: 209551852

Following gene: 209551857

Centisome position: 98.23

GC content: 67.98

Gene sequence:

>912_bases
ATGAAGACAAAGCTCCGCTCCACTGCCGACCTGGCGGCAACCGCGCTCGCACCCGCCATCTGGGGCAGCACCTATATCGT
CACGACCTCCTTCCTGCCGGCCGGATATCCGCTGACGGTGGCGATGCTCCGGGCCTTGCCGGCCGGACTGCTGCTTCTGC
TCCTGGTGAGGAAGCTGCCTTTCGGCATCTGGTGGGGAAGGGCCTTCATTCTCGGCGCCCTGAACTTCTCGTTCTTCTGG
GCGATGCTCTTCGTCTCTGCCTACAGGCTCCCCGGCGGCGTTGCCGCAACGGTCGGCGCGGTGCAGCCGCTGATCGTCAT
CGCGCTGTCGCGGCTTTTCCTCGGCAAACCGATCCGGCCGCTTGCCGTGCTGGCCGGTCTTGCCGGCATGGCCGGTGTCG
GGCTGCTGGTGCTGACACCGAAGGCGGGGCTTGATCCTGTGGGGGTTGCCGCCGGTCTTGCCGGCGCCGTCTCGATGGCC
TTCGGCACGGTGCTGACGCGGCGCTGGACGCCGCCGGTGTCGAACCTCACCTTCACCGCCTGGCAATTGGCGGCAGGCGG
CATGCTGCTGGTGCCTTTTGCGCTTTTCCTAGAGCCGGCGCTGCCGACGCCGACTATCGCAAATATTGCCGGCATCGCCT
ATCTCGGCCTGATCGGCGCGGCCTTCACCTATCTGCTCTGGTTCCGCGGCCTGGCCCGCATCGAGCCCTCGGCGGTCGCC
TCGCTGGGCTTTCTCAGCCCTGTCGTCGCGACCCTGCTCGGCTGGCTGGCGCTCGGCCAGAGCCTGGCGCCGGTGCAGAT
CGCCGGCTTCGCCATGGTGCTCGCCAGCGTCTGGCTCAGTCAGCGCGCCACGATGCCGGTCAGGCCCATTCGCCCTGCCG
CATCACCGGAACCCGCGAACCATCCGGCTTGA

Upstream 100 bases:

>100_bases
TGCTGCTGTCTTTGCTCATGATCCACCGATAACAGCCATTATCTTGACGTCAAGATAAAAAGGCGTAAGGTGCATTTATC
TTGAAATAGAGATTCTTGAT

Downstream 100 bases:

>100_bases
GACCGTCGATATCGACCTTGTTCGAGCCGATCATCCAGTCGATATGGATCAGGCTGGAATTGCCGCCCTGCGCCTTGATC
TCTTCCTGGCTCAGCGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKTKLRSTADLAATALAPAIWGSTYIVTTSFLPAGYPLTVAMLRALPAGLLLLLLVRKLPFGIWWGRAFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIALSRLFLGKPIRPLAVLAGLAGMAGVGLLVLTPKAGLDPVGVAAGLAGAVSMA
FGTVLTRRWTPPVSNLTFTAWQLAAGGMLLVPFALFLEPALPTPTIANIAGIAYLGLIGAAFTYLLWFRGLARIEPSAVA
SLGFLSPVVATLLGWLALGQSLAPVQIAGFAMVLASVWLSQRATMPVRPIRPAASPEPANHPA

Sequences:

>Translated_303_residues
MKTKLRSTADLAATALAPAIWGSTYIVTTSFLPAGYPLTVAMLRALPAGLLLLLLVRKLPFGIWWGRAFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIALSRLFLGKPIRPLAVLAGLAGMAGVGLLVLTPKAGLDPVGVAAGLAGAVSMA
FGTVLTRRWTPPVSNLTFTAWQLAAGGMLLVPFALFLEPALPTPTIANIAGIAYLGLIGAAFTYLLWFRGLARIEPSAVA
SLGFLSPVVATLLGWLALGQSLAPVQIAGFAMVLASVWLSQRATMPVRPIRPAASPEPANHPA
>Mature_303_residues
MKTKLRSTADLAATALAPAIWGSTYIVTTSFLPAGYPLTVAMLRALPAGLLLLLLVRKLPFGIWWGRAFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIALSRLFLGKPIRPLAVLAGLAGMAGVGLLVLTPKAGLDPVGVAAGLAGAVSMA
FGTVLTRRWTPPVSNLTFTAWQLAAGGMLLVPFALFLEPALPTPTIANIAGIAYLGLIGAAFTYLLWFRGLARIEPSAVA
SLGFLSPVVATLLGWLALGQSLAPVQIAGFAMVLASVWLSQRATMPVRPIRPAASPEPANHPA

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1788269, Length=207, Percent_Identity=28.9855072463768, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31544; Mature: 31544

Theoretical pI: Translated: 12.00; Mature: 12.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKLRSTADLAATALAPAIWGSTYIVTTSFLPAGYPLTVAMLRALPAGLLLLLLVRKLP
CCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
FGIWWGRAFILGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVIALSRLFLGKPIRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
LAVLAGLAGMAGVGLLVLTPKAGLDPVGVAAGLAGAVSMAFGTVLTRRWTPPVSNLTFTA
HHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WQLAAGGMLLVPFALFLEPALPTPTIANIAGIAYLGLIGAAFTYLLWFRGLARIEPSAVA
HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SLGFLSPVVATLLGWLALGQSLAPVQIAGFAMVLASVWLSQRATMPVRPIRPAASPEPAN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HPA
CCC
>Mature Secondary Structure
MKTKLRSTADLAATALAPAIWGSTYIVTTSFLPAGYPLTVAMLRALPAGLLLLLLVRKLP
CCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
FGIWWGRAFILGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVIALSRLFLGKPIRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
LAVLAGLAGMAGVGLLVLTPKAGLDPVGVAAGLAGAVSMAFGTVLTRRWTPPVSNLTFTA
HHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
WQLAAGGMLLVPFALFLEPALPTPTIANIAGIAYLGLIGAAFTYLLWFRGLARIEPSAVA
HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SLGFLSPVVATLLGWLALGQSLAPVQIAGFAMVLASVWLSQRATMPVRPIRPAASPEPAN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]