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The map label for this gene is ycjC [C]

Identifier: 209551598

GI number: 209551598

Start: 4200492

End: 4201301

Strand: Direct

Name: ycjC [C]

Synonym: Rleg2_4027

Alternate gene names: 209551598

Gene position: 4200492-4201301 (Clockwise)

Preceding gene: 209551595

Following gene: 209551599

Centisome position: 92.56

GC content: 65.06

Gene sequence:

>810_bases
ATGAACGATAACGGGCCGGTACGCTACAAGGTGGCGGAGGCCGCACGATTGGCGGGTGTTTCAGCCTCGACGCTGCGTCT
CTGGGAAAGCCAGGGTCTGGTCGTTCCCGACCGTTCGCAGACCGGTCATCGGCAATACAGCGCCGACGATGTGGCGCGGC
TGAAGCGCATCTCCTGGTATCGGGTCGAGCGTGGTCTCAATCCCGCCGCCATCCGCGAGGCGCTGGAAGGCGAGGAGCCT
TCTGCCGATGGCGCCGAGGCAAGCCAGGGCACCGGCCTCGGCCGCAAGCTGCGCAGCCTGCGCCACGCCGCCGGCAAGAC
GCTGGATCAGGTGGCCGGCGATATCGGCGTCACCTCCTCGACGCTTTCGACGCTGGAGCGCACTTCGCAGGGCGTCGGTT
TCAAGACGCTGCACGATCTCGCCGATTATTACGGCACTACCGTCTCACGCCTCTCCGGCGAAGAAAGTGCTGAGGTGCCG
GTGCTGGTGCGTGCCGGGGAATGGCGCAGCTGGCCGGAAACGACGCCCGGAGTCGCGGTGCAGCTGCTGGCCGAAGGCCC
CAGAATGATGGATTGCCATCGTTTCGTGCTGGCGCCGGGTGCTGCCAGCGAGGGCGCCTATCGCCATGAGGGCGAGGAAT
TCATGCATGTCCTGTCCGGCCGGCTCGAGCTGGTGCTCGACAGCGATCAGTTCTTCGATCTCGGCCCGGGCGATTCACTT
TATTTCGAAAGCCGCCGCTACCATTCCTGGCGCAACCGCCATGACGGCGAAACCGTGCTTCTCTGGATCAACACGCCGCC
GACATTCTGA

Upstream 100 bases:

>100_bases
CCTACATTTTTCCTGCAAGAAAACAAGTGGGATTTTTTGCTTCAAACATCACGCTTTTTGATAAATGCTCGGCAGCGATT
GGAATCAGGGATATTGGCGG

Downstream 100 bases:

>100_bases
AACGCCTGCAGAGGAAGCGGTTTCGCATTTTGCGGCTTTGCGCTATAGCGCACTGCATAATTCCTTAAATCGCCATCGAT
TTAAGGATAAAATTATGCGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator MerR Family; Transcriptional Regulator Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulatory Protein; MerR Family Regulatory Family; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Familiy; Transcriptional Regulator Cro/CI Family Protein; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNDNGPVRYKVAEAARLAGVSASTLRLWESQGLVVPDRSQTGHRQYSADDVARLKRISWYRVERGLNPAAIREALEGEEP
SADGAEASQGTGLGRKLRSLRHAAGKTLDQVAGDIGVTSSTLSTLERTSQGVGFKTLHDLADYYGTTVSRLSGEESAEVP
VLVRAGEWRSWPETTPGVAVQLLAEGPRMMDCHRFVLAPGAASEGAYRHEGEEFMHVLSGRLELVLDSDQFFDLGPGDSL
YFESRRYHSWRNRHDGETVLLWINTPPTF

Sequences:

>Translated_269_residues
MNDNGPVRYKVAEAARLAGVSASTLRLWESQGLVVPDRSQTGHRQYSADDVARLKRISWYRVERGLNPAAIREALEGEEP
SADGAEASQGTGLGRKLRSLRHAAGKTLDQVAGDIGVTSSTLSTLERTSQGVGFKTLHDLADYYGTTVSRLSGEESAEVP
VLVRAGEWRSWPETTPGVAVQLLAEGPRMMDCHRFVLAPGAASEGAYRHEGEEFMHVLSGRLELVLDSDQFFDLGPGDSL
YFESRRYHSWRNRHDGETVLLWINTPPTF
>Mature_269_residues
MNDNGPVRYKVAEAARLAGVSASTLRLWESQGLVVPDRSQTGHRQYSADDVARLKRISWYRVERGLNPAAIREALEGEEP
SADGAEASQGTGLGRKLRSLRHAAGKTLDQVAGDIGVTSSTLSTLERTSQGVGFKTLHDLADYYGTTVSRLSGEESAEVP
VLVRAGEWRSWPETTPGVAVQLLAEGPRMMDCHRFVLAPGAASEGAYRHEGEEFMHVLSGRLELVLDSDQFFDLGPGDSL
YFESRRYHSWRNRHDGETVLLWINTPPTF

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29611; Mature: 29611

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50943 HTH_CROC1 ; PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNGPVRYKVAEAARLAGVSASTLRLWESQGLVVPDRSQTGHRQYSADDVARLKRISWY
CCCCCCEEEEHHHHHHHCCCCHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
RVERGLNPAAIREALEGEEPSADGAEASQGTGLGRKLRSLRHAAGKTLDQVAGDIGVTSS
HHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHH
TLSTLERTSQGVGFKTLHDLADYYGTTVSRLSGEESAEVPVLVRAGEWRSWPETTPGVAV
HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHH
QLLAEGPRMMDCHRFVLAPGAASEGAYRHEGEEFMHVLSGRLELVLDSDQFFDLGPGDSL
HHHHCCCCCCHHHHEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCEEECCCCCCE
YFESRRYHSWRNRHDGETVLLWINTPPTF
EEHHHHHHHHHCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MNDNGPVRYKVAEAARLAGVSASTLRLWESQGLVVPDRSQTGHRQYSADDVARLKRISWY
CCCCCCEEEEHHHHHHHCCCCHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
RVERGLNPAAIREALEGEEPSADGAEASQGTGLGRKLRSLRHAAGKTLDQVAGDIGVTSS
HHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHH
TLSTLERTSQGVGFKTLHDLADYYGTTVSRLSGEESAEVPVLVRAGEWRSWPETTPGVAV
HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHH
QLLAEGPRMMDCHRFVLAPGAASEGAYRHEGEEFMHVLSGRLELVLDSDQFFDLGPGDSL
HHHHCCCCCCHHHHEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCEEECCCCCCE
YFESRRYHSWRNRHDGETVLLWINTPPTF
EEHHHHHHHHHCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA