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The map label for this gene is ydeB [H]

Identifier: 209551385

GI number: 209551385

Start: 3948296

End: 3948868

Strand: Reverse

Name: ydeB [H]

Synonym: Rleg2_3814

Alternate gene names: 209551385

Gene position: 3948868-3948296 (Counterclockwise)

Preceding gene: 209551386

Following gene: 209551384

Centisome position: 87.02

GC content: 56.89

Gene sequence:

>573_bases
ATGACGACTCAGCAGAAAAAGCCTTCCACAGCACGCCATGGCTTCAAGACCGGTGAATCGATCGTCTACCCCGCTCACGG
CGTCGGTACCATCACCGCTATCGAAGAGCAAGAAGTTGCCGGCATGAAGCTCGAACTTTTCGTTATCGATTTCGAAAAGG
ACAAGATGCGGCTGAAGGTTCCGGTCGCGAAGGCGATGAGCATCGGCATGCGCAAGCTTTCGGAAACGGATTTCGTCGAG
CGTGCATTGAAGGTCGTGCAGGGCAAGGCCCGCGTCAAGCGCACCATGTGGTCCCGCCGCGCCCAGGAATATGATGCCAA
GATCAATTCCGGCGATCTGATTTCCATCGCTGAAGTCGTGCGCGATCTCTATCGTGCCGAAAACCAGCCTGAACAGTCCT
ATTCCGAGCGTCAGCTTTATGAGGCTGCACTCGACCGCATGGCGCGCGAAATCGCCGCCGTCAACAAGATGTCGGAAACC
GAAGCCGTCCGCCTCGTCGAGACCAATCTCAACAAGGGTCCGAAGCGCGGCAAGGCGATCGAAGAAGACGATTCGCAGGA
CGAAGCCGCCTAA

Upstream 100 bases:

>100_bases
ACCAGAGTGAAGTCACCCGACGGATTCTACCGTCTCACCCGGGCCTGACTGACCCGGCTCCGGCCGCCGCCGGAAGCGTA
ACAGGGAGTTTTTGAATAGA

Downstream 100 bases:

>100_bases
GGCGATCCTGTTTTTCCTATCAAAAAACCCGGCGCAAGCCGGGTTTTTTATTGGAACTTTTTCACGGCTGCCGCGTTTAA
CACACGTAATTGCGGGCTGC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAMSIGMRKLSETDFVE
RALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSET
EAVRLVETNLNKGPKRGKAIEEDDSQDEAA

Sequences:

>Translated_190_residues
MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAMSIGMRKLSETDFVE
RALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSET
EAVRLVETNLNKGPKRGKAIEEDDSQDEAA
>Mature_189_residues
TTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAMSIGMRKLSETDFVER
ALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETE
AVRLVETNLNKGPKRGKAIEEDDSQDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21422; Mature: 21290

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV
CCCCCCCCCHHHCCCCCCCEEEECCCCCEEEEEECHHHHCCEEEEEEEEEECCCCEEEEC
PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKAI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EEDDSQDEAA
CCCCCCCCCC
>Mature Secondary Structure 
TTQQKKPSTARHGFKTGESIVYPAHGVGTITAIEEQEVAGMKLELFVIDFEKDKMRLKV
CCCCCCCCHHHCCCCCCCEEEECCCCCEEEEEECHHHHCCEEEEEEEEEECCCCEEEEC
PVAKAMSIGMRKLSETDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVETNLNKGPKRGKAI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EEDDSQDEAA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]