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The map label for this gene is yvoA [H]

Identifier: 209551374

GI number: 209551374

Start: 3934325

End: 3935098

Strand: Reverse

Name: yvoA [H]

Synonym: Rleg2_3803

Alternate gene names: 209551374

Gene position: 3935098-3934325 (Counterclockwise)

Preceding gene: 209551375

Following gene: 209551373

Centisome position: 86.72

GC content: 65.76

Gene sequence:

>774_bases
ATGGATAGAACCAGTCTGATAGCGGAGCTGAACGGCCGCGGCCTGCGCGACGCGGCGCTGACCGGGCCGCTCTACAAGCG
GCTGGCGCAGACGCTGACCGGCCTTATTCAGGAAGGATTGCTGAAGCCCGGCACGGCGCTGCCGGGGGAGCGCGATCTTG
CCGAGGCCTTGAAGCTCGGCCGCGTCACCGTGCGTACCGCCTATCGCGATCTGATGGCATCCGGCGCACTGGAATCGCGC
CACGGAAGCGGTACTTTCGTATCGAGCAAGGTGGAGCGCATGGAGCAGTCGCTCTGGCGGCTGTCCTCCTTCTCCGCCGA
TATGCGCTCGCGCGGGCGTCAACCAGCTGCAAAGATCTTGTCACGGACGGTCAATACGCCGTCGCCGGACGAATCCTTCC
TGCTCGGGCTTGGCGGTGACGAGCCGGTGCTCAGGCTCGACCGGCTGCGTCTCGCCGACGGCCTGCCGCTGGCGATCGAA
CGCGCCGTGGTGCCGATCAAGTTTTTAGGCGACGATGCCGGCGGCGAGGGATCGCTCTACGATGCGCTGACCGCCAACGG
CCACAGGCCGGTGCGGGCGCTGCAGCGGCTGACCGCGGTGACGCTTGACCCGTCCTCCGCGGCGATCCTGAACGTCGATG
CCGGCGCGCCGGCGCTGCTGATCGAACGCGTCTCGCGTCTGGAAGACCAGCGCGTCGTTGAATACACCCGCTCGCATTAT
CGCGGCGATGCCTATGATTTCGTTGCCGAATTGAGAATCGGAGATGACCTATGA

Upstream 100 bases:

>100_bases
ATCGCTATGAAAACCTCTCCGGCCCGCCGGGGAGGTTTTTTCTTGCTTGTCCATGATTCTATCTTGCTGATTGGTTCTAA
ATAGGTTCTATTGTGTGCCT

Downstream 100 bases:

>100_bases
GTGAGAACCAGTCGCTGATGCTTCAAGAAGCGGGCCAATCGCCGGAGGTGGTGGCCACGCTTCTCGAAAAGGAAAAACCG
GTCTTTGCCGAGATTGCCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDRTSLIAELNGRGLRDAALTGPLYKRLAQTLTGLIQEGLLKPGTALPGERDLAEALKLGRVTVRTAYRDLMASGALESR
HGSGTFVSSKVERMEQSLWRLSSFSADMRSRGRQPAAKILSRTVNTPSPDESFLLGLGGDEPVLRLDRLRLADGLPLAIE
RAVVPIKFLGDDAGGEGSLYDALTANGHRPVRALQRLTAVTLDPSSAAILNVDAGAPALLIERVSRLEDQRVVEYTRSHY
RGDAYDFVAELRIGDDL

Sequences:

>Translated_257_residues
MDRTSLIAELNGRGLRDAALTGPLYKRLAQTLTGLIQEGLLKPGTALPGERDLAEALKLGRVTVRTAYRDLMASGALESR
HGSGTFVSSKVERMEQSLWRLSSFSADMRSRGRQPAAKILSRTVNTPSPDESFLLGLGGDEPVLRLDRLRLADGLPLAIE
RAVVPIKFLGDDAGGEGSLYDALTANGHRPVRALQRLTAVTLDPSSAAILNVDAGAPALLIERVSRLEDQRVVEYTRSHY
RGDAYDFVAELRIGDDL
>Mature_257_residues
MDRTSLIAELNGRGLRDAALTGPLYKRLAQTLTGLIQEGLLKPGTALPGERDLAEALKLGRVTVRTAYRDLMASGALESR
HGSGTFVSSKVERMEQSLWRLSSFSADMRSRGRQPAAKILSRTVNTPSPDESFLLGLGGDEPVLRLDRLRLADGLPLAIE
RAVVPIKFLGDDAGGEGSLYDALTANGHRPVRALQRLTAVTLDPSSAAILNVDAGAPALLIERVSRLEDQRVVEYTRSHY
RGDAYDFVAELRIGDDL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=249, Percent_Identity=33.7349397590361, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=31.7596566523605, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082252, Length=145, Percent_Identity=30.3448275862069, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=25, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27860; Mature: 27860

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTSLIAELNGRGLRDAALTGPLYKRLAQTLTGLIQEGLLKPGTALPGERDLAEALKLG
CCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
RVTVRTAYRDLMASGALESRHGSGTFVSSKVERMEQSLWRLSSFSADMRSRGRQPAAKIL
HHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SRTVNTPSPDESFLLGLGGDEPVLRLDRLRLADGLPLAIERAVVPIKFLGDDAGGEGSLY
HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCH
DALTANGHRPVRALQRLTAVTLDPSSAAILNVDAGAPALLIERVSRLEDQRVVEYTRSHY
HHHHCCCCHHHHHHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
RGDAYDFVAELRIGDDL
CCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDRTSLIAELNGRGLRDAALTGPLYKRLAQTLTGLIQEGLLKPGTALPGERDLAEALKLG
CCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
RVTVRTAYRDLMASGALESRHGSGTFVSSKVERMEQSLWRLSSFSADMRSRGRQPAAKIL
HHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SRTVNTPSPDESFLLGLGGDEPVLRLDRLRLADGLPLAIERAVVPIKFLGDDAGGEGSLY
HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCH
DALTANGHRPVRALQRLTAVTLDPSSAAILNVDAGAPALLIERVSRLEDQRVVEYTRSHY
HHHHCCCCHHHHHHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
RGDAYDFVAELRIGDDL
CCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]