| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is 209551363
Identifier: 209551363
GI number: 209551363
Start: 3922342
End: 3924822
Strand: Reverse
Name: 209551363
Synonym: Rleg2_3792
Alternate gene names: NA
Gene position: 3924822-3922342 (Counterclockwise)
Preceding gene: 209551364
Following gene: 209551362
Centisome position: 86.49
GC content: 63.85
Gene sequence:
>2481_bases ATGCGGGGGCGTTTGGCAAGCATCGGTGCCGAGGAAAGCCTGCTTTCCGAAGGCTGGAACCTGATCCTGACGGAGCCGGG CGCCTGCGCCGTGCCGCATGACATTCCGCTTTCCGCGCAATTCATTCCAGCACCCGTTCCCGGCACCGTTGCCGCAGCGC TCGAAAAGGCCGGGCTGTTCGACCGGGAAAATCCAGAGCCGTTGAACACCAGGGATGCCTGGTATCTCTGCCGGCTGTTC GATGCCGAGCCGGGTGAAGCGATCCTGCGTTTCGCGGGACTTGCCACACTTTGCCATGTCTTCCTCAACGGCCAGGAAAT CCTGTTTTCCGAGAGCATGTTCACGGCCCATGAAATCCCGGTAACGCTTGTGGGTGGCGACGAGCTGGCGCTGTGCTTCC GGGCGCTCGGCCCCCGCCTGTCGGAGCCTGGCCCGCGTGCACGCTGGCGGCCGCAGATGATCACGCCGGCGGGTCTCAAA AATTTCCGCACGACGCTGCTCGGCCATATGCCGGGCTGGTGCCCCGATATCCATGCGGTCGGGCCATGGCGGCCGATCTC GCTGGTGCGGCGGAACCCCGTCTCGATCGACAATGTCTCCGTCCGCGCCGTGCTGGACGAGAATGGCGTCGGCCGTCTCA GCGTTTCCCTGTACAGCAATGCCGAGAATCCGGCAATGCTGCTGCGCTGCGGCGGCATGGAGCAGCCTTTCGAGAAGATC GGCGACAGTCATTACTCGGCTATCCTCAAGCTTGCCGACATCGAGCCCTGGTGGCCGCACACACATGGCCTCCCGCGTCT TTACGATTTAGCGCTGGTTTCCGACGGCGTGGAATATTCCCTCGGCACGACCGGCTTCCGGCGGATCGACGTCGAGCGTG GCGTCGATGGCGACGACTTCGCGCTCTTTATTAACGGGGAACGCATCTTTTGCCGCGGCGCGGTGTGGACGACAGCCGAT ATCGCGCGTCTGCCGGGCACGCGGGCGGATTATGAGCCGTTCCTGCGGCTGGCGGCGCAAGCCGGCATGAACATGATCCG AATCGGCGGCACCATGGCCTATGAGACACCGAATTTCTTCGCGCTTTGCGACGAACTCGGCCTGCTGGTGTGGCAGGATT TCATGTTCGCCAATTTCGACTATCCACGCAACGACAAGGCGTTTCTCGGCCACGTGCATGCGGAGGTCGAGGAATTCCTG CACGGCGTCCAGGCGTCGCCATCGCTGGCGGTGCTCTGCGGCGGCAGCGAAATCCATCAGCAGGCGGCGATGCTCGGCCT GCCCGTGGAATTCTGGAGCGGGCCGGTCACCGATGAAATCATCCCGGCCATCGTCACGCGCATGCGTCCCGACGTGCCCT ATGTTCCGAATTCGCCCTATGGCGGGGCGATGCCGTTTTCGCCGAATGCCGGTATCGCCCATTATTACGGCGTCGGCGCC TATATGCGGCCGATTGCCGATGCGCGCCGTGCCGATGTGCGTTTTGCCTCCGAAAGCCTTGCCTTTGCGCATGTGCCGCA GCAAAGGACGCTGCATCGTCATCTCGACGTGCCCTCAGTCCACAGCCCGCTCTGGAAGGCTCGCGTGCCGCGCGACCGCA GCGCATCCTGGGATTTCGAGGACGTTCGCGATTTCTATCTGGAGCTTCTCTATGGTTTCGATCCGGCCCGGCTGCGGCGC GAAGACCAGCAACTTTATCTCGATTTCTCCCGCGCGGTCACCGGCGAGGTGATCGAGGAGACCTTTGCCGAATGGCGGCG CAAGGGTTCGGCTTGCAACGGCGCGCTCGTCTGGACGCTGCAGGACCTGCTGCCCGGTTCCGGCTGGGGGGTGATCGATT CCACCGGCGAGCCGAAGCCGGTCTGGTATGCGATGCGCCGCGCCTTCCGGCCGGTGCAGACGGTGTTCACCGACGAGGGA ACCAACGGCCTCGACGTGCATGTCGTCAACGAGACGGACGCGGACCTCGACGTCGAGCTCGAGGTCGTCTGTCTGCGCGA CGGAAAGCAGCAGGTCGTCAGCGGCAGCAGAGCCTTCAAGCTGGCGGCAAGGGACACGGAGCGTCTTGCCACGACCGCGC TGTTCGGCGCTTTCTTCGATACGACCTATGCCTTCCGTTTCGGACCGCCGTCGCATGATGTCAGTGTGGCGCGCCTGCGT TCGCTGGCGGATGGCGCCATTTTGGCGGAAAGCTTCCACTTTCCCTGCGGACGGGACAAGGCGCTGCATGAAGCAGGCAT CGAGGCATCGCTCGGAAGAGACGGCGACGACTGGTTCGTCGATCTCAGGACCGACCGGCTGGCGCAATCGGTGCATATCG ACGTCGACGGCTACCGGCCCGATGACGACTGGTTCCATCTCGCCCCCGGCGCGATGCGGCGCATGAAACTCCACGCGCTG CCGGGCACCGAGAGCGATATTGCGCCTGCAGGCGAGATCAGAAGTCTAGGCAGTTCGCATCGTGTCGTGCTCTCGGGCTG A
Upstream 100 bases:
>100_bases AAGTTCGAACCGCTGCAGGCAGCCCTTGATCCGGCCGCCGATGCATGGGATTCCATGATGACATCGCTTGCGGAGCGAAT CTGAGGCCGGAGATCTGACC
Downstream 100 bases:
>100_bases CGCTCTCCGCGAAAACGATGCCCATCCATTGAGAAAGACCGTGATTTGAGAACGACATACCGCTTTTTGCGTGCCCATGT CCTGCAGCGGCTGATCCCGC
Product: glycoside hydrolase family 2 sugar binding
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Glycoside Hydrolase Family 2 Protein; Glycosidase; Glycoside Hydrolase Family 2 TIM Barrel; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Beta-Galactosidase/Beta- Glucuronidase Family Protein; O-Glycosyl Hydrolase; Beta-Mannosidase Man2A; Coagulation Factor 5/8 Type Domain Protein; Beta-Galactosidase/Beta; Glycosyl Hydrolase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; BETA-Mannosidase Protein
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MRGRLASIGAEESLLSEGWNLILTEPGACAVPHDIPLSAQFIPAPVPGTVAAALEKAGLFDRENPEPLNTRDAWYLCRLF DAEPGEAILRFAGLATLCHVFLNGQEILFSESMFTAHEIPVTLVGGDELALCFRALGPRLSEPGPRARWRPQMITPAGLK NFRTTLLGHMPGWCPDIHAVGPWRPISLVRRNPVSIDNVSVRAVLDENGVGRLSVSLYSNAENPAMLLRCGGMEQPFEKI GDSHYSAILKLADIEPWWPHTHGLPRLYDLALVSDGVEYSLGTTGFRRIDVERGVDGDDFALFINGERIFCRGAVWTTAD IARLPGTRADYEPFLRLAAQAGMNMIRIGGTMAYETPNFFALCDELGLLVWQDFMFANFDYPRNDKAFLGHVHAEVEEFL HGVQASPSLAVLCGGSEIHQQAAMLGLPVEFWSGPVTDEIIPAIVTRMRPDVPYVPNSPYGGAMPFSPNAGIAHYYGVGA YMRPIADARRADVRFASESLAFAHVPQQRTLHRHLDVPSVHSPLWKARVPRDRSASWDFEDVRDFYLELLYGFDPARLRR EDQQLYLDFSRAVTGEVIEETFAEWRRKGSACNGALVWTLQDLLPGSGWGVIDSTGEPKPVWYAMRRAFRPVQTVFTDEG TNGLDVHVVNETDADLDVELEVVCLRDGKQQVVSGSRAFKLAARDTERLATTALFGAFFDTTYAFRFGPPSHDVSVARLR SLADGAILAESFHFPCGRDKALHEAGIEASLGRDGDDWFVDLRTDRLAQSVHIDVDGYRPDDDWFHLAPGAMRRMKLHAL PGTESDIAPAGEIRSLGSSHRVVLSG
Sequences:
>Translated_826_residues MRGRLASIGAEESLLSEGWNLILTEPGACAVPHDIPLSAQFIPAPVPGTVAAALEKAGLFDRENPEPLNTRDAWYLCRLF DAEPGEAILRFAGLATLCHVFLNGQEILFSESMFTAHEIPVTLVGGDELALCFRALGPRLSEPGPRARWRPQMITPAGLK NFRTTLLGHMPGWCPDIHAVGPWRPISLVRRNPVSIDNVSVRAVLDENGVGRLSVSLYSNAENPAMLLRCGGMEQPFEKI GDSHYSAILKLADIEPWWPHTHGLPRLYDLALVSDGVEYSLGTTGFRRIDVERGVDGDDFALFINGERIFCRGAVWTTAD IARLPGTRADYEPFLRLAAQAGMNMIRIGGTMAYETPNFFALCDELGLLVWQDFMFANFDYPRNDKAFLGHVHAEVEEFL HGVQASPSLAVLCGGSEIHQQAAMLGLPVEFWSGPVTDEIIPAIVTRMRPDVPYVPNSPYGGAMPFSPNAGIAHYYGVGA YMRPIADARRADVRFASESLAFAHVPQQRTLHRHLDVPSVHSPLWKARVPRDRSASWDFEDVRDFYLELLYGFDPARLRR EDQQLYLDFSRAVTGEVIEETFAEWRRKGSACNGALVWTLQDLLPGSGWGVIDSTGEPKPVWYAMRRAFRPVQTVFTDEG TNGLDVHVVNETDADLDVELEVVCLRDGKQQVVSGSRAFKLAARDTERLATTALFGAFFDTTYAFRFGPPSHDVSVARLR SLADGAILAESFHFPCGRDKALHEAGIEASLGRDGDDWFVDLRTDRLAQSVHIDVDGYRPDDDWFHLAPGAMRRMKLHAL PGTESDIAPAGEIRSLGSSHRVVLSG >Mature_826_residues MRGRLASIGAEESLLSEGWNLILTEPGACAVPHDIPLSAQFIPAPVPGTVAAALEKAGLFDRENPEPLNTRDAWYLCRLF DAEPGEAILRFAGLATLCHVFLNGQEILFSESMFTAHEIPVTLVGGDELALCFRALGPRLSEPGPRARWRPQMITPAGLK NFRTTLLGHMPGWCPDIHAVGPWRPISLVRRNPVSIDNVSVRAVLDENGVGRLSVSLYSNAENPAMLLRCGGMEQPFEKI GDSHYSAILKLADIEPWWPHTHGLPRLYDLALVSDGVEYSLGTTGFRRIDVERGVDGDDFALFINGERIFCRGAVWTTAD IARLPGTRADYEPFLRLAAQAGMNMIRIGGTMAYETPNFFALCDELGLLVWQDFMFANFDYPRNDKAFLGHVHAEVEEFL HGVQASPSLAVLCGGSEIHQQAAMLGLPVEFWSGPVTDEIIPAIVTRMRPDVPYVPNSPYGGAMPFSPNAGIAHYYGVGA YMRPIADARRADVRFASESLAFAHVPQQRTLHRHLDVPSVHSPLWKARVPRDRSASWDFEDVRDFYLELLYGFDPARLRR EDQQLYLDFSRAVTGEVIEETFAEWRRKGSACNGALVWTLQDLLPGSGWGVIDSTGEPKPVWYAMRRAFRPVQTVFTDEG TNGLDVHVVNETDADLDVELEVVCLRDGKQQVVSGSRAFKLAARDTERLATTALFGAFFDTTYAFRFGPPSHDVSVARLR SLADGAILAESFHFPCGRDKALHEAGIEASLGRDGDDWFVDLRTDRLAQSVHIDVDGYRPDDDWFHLAPGAMRRMKLHAL PGTESDIAPAGEIRSLGSSHRVVLSG
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=872, Percent_Identity=23.1651376146789, Blast_Score=145, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17550784, Length=464, Percent_Identity=25, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643838, Length=663, Percent_Identity=23.9819004524887, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI24643840, Length=563, Percent_Identity=24.6891651865009, Blast_Score=104, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91326; Mature: 91326
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGRLASIGAEESLLSEGWNLILTEPGACAVPHDIPLSAQFIPAPVPGTVAAALEKAGLF CCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCC DRENPEPLNTRDAWYLCRLFDAEPGEAILRFAGLATLCHVFLNGQEILFSESMFTAHEIP CCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC VTLVGGDELALCFRALGPRLSEPGPRARWRPQMITPAGLKNFRTTLLGHMPGWCPDIHAV EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC GPWRPISLVRRNPVSIDNVSVRAVLDENGVGRLSVSLYSNAENPAMLLRCGGMEQPFEKI CCCCCHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHH GDSHYSAILKLADIEPWWPHTHGLPRLYDLALVSDGVEYSLGTTGFRRIDVERGVDGDDF CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCEEEEEHHCCCCCCCE ALFINGERIFCRGAVWTTADIARLPGTRADYEPFLRLAAQAGMNMIRIGGTMAYETPNFF EEEEECCEEEEECCEECCHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCEEEECCCCHH ALCDELGLLVWQDFMFANFDYPRNDKAFLGHVHAEVEEFLHGVQASPSLAVLCGGSEIHQ HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH QAAMLGLPVEFWSGPVTDEIIPAIVTRMRPDVPYVPNSPYGGAMPFSPNAGIAHYYGVGA HHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCH YMRPIADARRADVRFASESLAFAHVPQQRTLHRHLDVPSVHSPLWKARVPRDRSASWDFE HHHHHHHHHHHHHEECCCCCEEEECCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHH DVRDFYLELLYGFDPARLRREDQQLYLDFSRAVTGEVIEETFAEWRRKGSACNGALVWTL HHHHHHHHHHHCCCHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE QDLLPGSGWGVIDSTGEPKPVWYAMRRAFRPVQTVFTDEGTNGLDVHVVNETDADLDVEL HHHCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHEECCCCCCEEEEEECCCCCCCCEEE EVVCLRDGKQQVVSGSRAFKLAARDTERLATTALFGAFFDTTYAFRFGPPSHDVSVARLR EEEEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH SLADGAILAESFHFPCGRDKALHEAGIEASLGRDGDDWFVDLRTDRLAQSVHIDVDGYRP HHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEHHHCCCEEEEEECCCCC DDDWFHLAPGAMRRMKLHALPGTESDIAPAGEIRSLGSSHRVVLSG CCCCEEECCHHHHHEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEC >Mature Secondary Structure MRGRLASIGAEESLLSEGWNLILTEPGACAVPHDIPLSAQFIPAPVPGTVAAALEKAGLF CCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCC DRENPEPLNTRDAWYLCRLFDAEPGEAILRFAGLATLCHVFLNGQEILFSESMFTAHEIP CCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC VTLVGGDELALCFRALGPRLSEPGPRARWRPQMITPAGLKNFRTTLLGHMPGWCPDIHAV EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC GPWRPISLVRRNPVSIDNVSVRAVLDENGVGRLSVSLYSNAENPAMLLRCGGMEQPFEKI CCCCCHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHH GDSHYSAILKLADIEPWWPHTHGLPRLYDLALVSDGVEYSLGTTGFRRIDVERGVDGDDF CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCEEEEEHHCCCCCCCE ALFINGERIFCRGAVWTTADIARLPGTRADYEPFLRLAAQAGMNMIRIGGTMAYETPNFF EEEEECCEEEEECCEECCHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCEEEECCCCHH ALCDELGLLVWQDFMFANFDYPRNDKAFLGHVHAEVEEFLHGVQASPSLAVLCGGSEIHQ HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH QAAMLGLPVEFWSGPVTDEIIPAIVTRMRPDVPYVPNSPYGGAMPFSPNAGIAHYYGVGA HHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCH YMRPIADARRADVRFASESLAFAHVPQQRTLHRHLDVPSVHSPLWKARVPRDRSASWDFE HHHHHHHHHHHHHEECCCCCEEEECCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHH DVRDFYLELLYGFDPARLRREDQQLYLDFSRAVTGEVIEETFAEWRRKGSACNGALVWTL HHHHHHHHHHHCCCHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE QDLLPGSGWGVIDSTGEPKPVWYAMRRAFRPVQTVFTDEGTNGLDVHVVNETDADLDVEL HHHCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHEECCCCCCEEEEEECCCCCCCCEEE EVVCLRDGKQQVVSGSRAFKLAARDTERLATTALFGAFFDTTYAFRFGPPSHDVSVARLR EEEEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH SLADGAILAESFHFPCGRDKALHEAGIEASLGRDGDDWFVDLRTDRLAQSVHIDVDGYRP HHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEHHHCCCEEEEEECCCCC DDDWFHLAPGAMRRMKLHALPGTESDIAPAGEIRSLGSSHRVVLSG CCCCEEECCHHHHHEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA