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The map label for this gene is ydcJ [H]

Identifier: 209551357

GI number: 209551357

Start: 3913568

End: 3914980

Strand: Reverse

Name: ydcJ [H]

Synonym: Rleg2_3786

Alternate gene names: 209551357

Gene position: 3914980-3913568 (Counterclockwise)

Preceding gene: 209551361

Following gene: 209551356

Centisome position: 86.27

GC content: 64.9

Gene sequence:

>1413_bases
ATGCCGCACGCCTTCGTTTCAACTGACCGTATCCGCTCGCTCTTCACCGAAGCGATGTCGCAGATGTATCGGGCGGAGGT
GCCGCAATATGGCACGCTGATCGAACTGGTGGCGGATGTGAATGCCGGCTGCCTCAAAAATAATCCCGATCTGCGCGAAC
GGCTTGCCGGCGCCGGCGAACTGGAGCGCATCGATGTCGAGCGCCACGGCGCCATCCGGCTCGGTACGGCGGAAGAGCTT
TTCACCATCCGCCGGCTGTTTGCGGTCATGGGCATGCAGTCGGTCGGCTATTACGATCTCTCGGTCGCGGGCGTGCCTGT
TCATTCCACCTGTTTTCGGCCGATCGACGAGGCCGCACTCAACATCAATCCGTTCCGCGTCTTCACCTCGCTGCTGCGAT
TGGAGCTGATCGAGGACGAAGGGCTGCGCGGCGAAGCCGAAGCCATTCTGGCAAAGCGGCGCATCTATACGCCGCGCGCC
GTCGCGCTGATCGAGCGCCACGAGCAGAATGGCGGCCTGACGGAGGCGGAGGTGACGGAGTTCGTCGCTGAGTCGCTTGA
GACCTTCCGCTGGCATGGCGAGGCGACGGTCAGCGCCGAAACCTACAAGCGCCTGCATGATGCGCACCGGCTGATCGCCG
ACGTCGTCAGCTTCAAGGGGCCGCATATCAACCATCTGACGCCGCGCACGCTCGATATCGACGCGGTCCAGGCCCGCATG
CCGGAACGCGGCATTACGCCGAAGGCCGTCATCGAAGGCCCGCCGCGCCGCCATTGCGATATCCTGCTGCGGCAGACGAG
CTTCAAGGCGCTTGAAGAAACGATCGTCTTTGCCGGTGACGCGGACGCGGTTCAAGGAACGCATACCGCCCGTTTCGGCG
AGATCGAACAGCGCGGCGTGGCGCTGACGGCCAAGGGCCGGGCGCTCTATGACCGGCTGCTTGCCTCGGTTCGCGGCGAA
GTGCAGGTCGGCGCCGGCGGCGCCAAGGCCGGCGCCTATGACCAGGAACTCGCCGAGCGCTTCAAGGCGCTGCCGGACAG
CTGGGACGAGCTGCGCAGGCAAGGTCTCGCCTTCTTCCGCTATTGCGCGACGCCTGCGGGTATTGCCGCGGCCGTCGGCG
GCACGCTACCCAAGGATCCGGAAGCGCTGATCGCCAAGGGTTACCTTGCCTTCTCGCCGATCGTCTACGAAGACTTCCTG
CCAGTCAGCGCCGCCGGCATCTTCCAATCGAACCTCGGCACCGACCAGCAGCAGAATTATGCGACGCATTCGAACCGCGA
TGCCTTCGAGGCGGCGCTCGGCGCCACCGTTCAGGACGAGCTGGCGCTTTATGCCGAGCGCCAGGCTGCCTCGCTGGATG
CGGCGATGGAAGCGCTGGGCCTTGCGGGTCTGCAGCTGAAGACCGTCGCGTAA

Upstream 100 bases:

>100_bases
CATTTCAGAATGAGCTATTTCCAAAATGTCGATATTTCCGCCTTTATGACAGTTGTAAAGAGGCTCATCCTGCAAAAACG
GAATGAGCCGGAGTTTTCAA

Downstream 100 bases:

>100_bases
AATGGCCTTCAACACTTCATCATATGCGTTAGAGTACCGCGATTTCGTTCCGATCGGACTAGACCATGCTGAATGATCCG
CGCTCCCACGGCCTCTGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MPHAFVSTDRIRSLFTEAMSQMYRAEVPQYGTLIELVADVNAGCLKNNPDLRERLAGAGELERIDVERHGAIRLGTAEEL
FTIRRLFAVMGMQSVGYYDLSVAGVPVHSTCFRPIDEAALNINPFRVFTSLLRLELIEDEGLRGEAEAILAKRRIYTPRA
VALIERHEQNGGLTEAEVTEFVAESLETFRWHGEATVSAETYKRLHDAHRLIADVVSFKGPHINHLTPRTLDIDAVQARM
PERGITPKAVIEGPPRRHCDILLRQTSFKALEETIVFAGDADAVQGTHTARFGEIEQRGVALTAKGRALYDRLLASVRGE
VQVGAGGAKAGAYDQELAERFKALPDSWDELRRQGLAFFRYCATPAGIAAAVGGTLPKDPEALIAKGYLAFSPIVYEDFL
PVSAAGIFQSNLGTDQQQNYATHSNRDAFEAALGATVQDELALYAERQAASLDAAMEALGLAGLQLKTVA

Sequences:

>Translated_470_residues
MPHAFVSTDRIRSLFTEAMSQMYRAEVPQYGTLIELVADVNAGCLKNNPDLRERLAGAGELERIDVERHGAIRLGTAEEL
FTIRRLFAVMGMQSVGYYDLSVAGVPVHSTCFRPIDEAALNINPFRVFTSLLRLELIEDEGLRGEAEAILAKRRIYTPRA
VALIERHEQNGGLTEAEVTEFVAESLETFRWHGEATVSAETYKRLHDAHRLIADVVSFKGPHINHLTPRTLDIDAVQARM
PERGITPKAVIEGPPRRHCDILLRQTSFKALEETIVFAGDADAVQGTHTARFGEIEQRGVALTAKGRALYDRLLASVRGE
VQVGAGGAKAGAYDQELAERFKALPDSWDELRRQGLAFFRYCATPAGIAAAVGGTLPKDPEALIAKGYLAFSPIVYEDFL
PVSAAGIFQSNLGTDQQQNYATHSNRDAFEAALGATVQDELALYAERQAASLDAAMEALGLAGLQLKTVA
>Mature_469_residues
PHAFVSTDRIRSLFTEAMSQMYRAEVPQYGTLIELVADVNAGCLKNNPDLRERLAGAGELERIDVERHGAIRLGTAEELF
TIRRLFAVMGMQSVGYYDLSVAGVPVHSTCFRPIDEAALNINPFRVFTSLLRLELIEDEGLRGEAEAILAKRRIYTPRAV
ALIERHEQNGGLTEAEVTEFVAESLETFRWHGEATVSAETYKRLHDAHRLIADVVSFKGPHINHLTPRTLDIDAVQARMP
ERGITPKAVIEGPPRRHCDILLRQTSFKALEETIVFAGDADAVQGTHTARFGEIEQRGVALTAKGRALYDRLLASVRGEV
QVGAGGAKAGAYDQELAERFKALPDSWDELRRQGLAFFRYCATPAGIAAAVGGTLPKDPEALIAKGYLAFSPIVYEDFLP
VSAAGIFQSNLGTDQQQNYATHSNRDAFEAALGATVQDELALYAERQAASLDAAMEALGLAGLQLKTVA

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=446, Percent_Identity=60.762331838565, Blast_Score=532, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 51417; Mature: 51286

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHAFVSTDRIRSLFTEAMSQMYRAEVPQYGTLIELVADVNAGCLKNNPDLRERLAGAGE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
LERIDVERHGAIRLGTAEELFTIRRLFAVMGMQSVGYYDLSVAGVPVHSTCFRPIDEAAL
CEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHC
NINPFRVFTSLLRLELIEDEGLRGEAEAILAKRRIYTPRAVALIERHEQNGGLTEAEVTE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
FVAESLETFRWHGEATVSAETYKRLHDAHRLIADVVSFKGPHINHLTPRTLDIDAVQARM
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
PERGITPKAVIEGPPRRHCDILLRQTSFKALEETIVFAGDADAVQGTHTARFGEIEQRGV
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHCCCCHHHCCCHHHCCE
ALTAKGRALYDRLLASVRGEVQVGAGGAKAGAYDQELAERFKALPDSWDELRRQGLAFFR
EEEECCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YCATPAGIAAAVGGTLPKDPEALIAKGYLAFSPIVYEDFLPVSAAGIFQSNLGTDQQQNY
HHCCCHHHHHHHCCCCCCCCHHHHHHCHHHHCCHHHHHCCCHHHHHHHHHCCCCCHHHCC
ATHSNRDAFEAALGATVQDELALYAERQAASLDAAMEALGLAGLQLKTVA
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure 
PHAFVSTDRIRSLFTEAMSQMYRAEVPQYGTLIELVADVNAGCLKNNPDLRERLAGAGE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
LERIDVERHGAIRLGTAEELFTIRRLFAVMGMQSVGYYDLSVAGVPVHSTCFRPIDEAAL
CEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHC
NINPFRVFTSLLRLELIEDEGLRGEAEAILAKRRIYTPRAVALIERHEQNGGLTEAEVTE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
FVAESLETFRWHGEATVSAETYKRLHDAHRLIADVVSFKGPHINHLTPRTLDIDAVQARM
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
PERGITPKAVIEGPPRRHCDILLRQTSFKALEETIVFAGDADAVQGTHTARFGEIEQRGV
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHCCCCHHHCCCHHHCCE
ALTAKGRALYDRLLASVRGEVQVGAGGAKAGAYDQELAERFKALPDSWDELRRQGLAFFR
EEEECCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YCATPAGIAAAVGGTLPKDPEALIAKGYLAFSPIVYEDFLPVSAAGIFQSNLGTDQQQNY
HHCCCHHHHHHHCCCCCCCCHHHHHHCHHHHCCHHHHHCCCHHHHHHHHHCCCCCHHHCC
ATHSNRDAFEAALGATVQDELALYAERQAASLDAAMEALGLAGLQLKTVA
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]