| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is ybbP [H]
Identifier: 209551304
GI number: 209551304
Start: 3858175
End: 3860718
Strand: Direct
Name: ybbP [H]
Synonym: Rleg2_3733
Alternate gene names: 209551304
Gene position: 3858175-3860718 (Clockwise)
Preceding gene: 209551303
Following gene: 209551305
Centisome position: 85.02
GC content: 66.31
Gene sequence:
>2544_bases ATGAACATCATCACGCCGCGCGTTTCGCTCGCTTTTCGCCTGGCGCTCCGCGAGCTGCGCGGCGGCATTCGCGGCTTCTA CATCTTCCTCGCCTGCATCGCGCTCGGCACCGGCGCCATCGCCGCCGTCAATTCCGTCTCGCAGTCGATCACCGATACGA TCGCCTCGCAGGGGCAGGAGCTGCTGGCCGGCGACGTCCGTTTCGAACTCAACAACCGCGAAGCGACGCCTGAGGAAATG GCTTTCCTCGACGGCCTCGGCACCGTTTCGGTGTCGACCGGCCTGCGCTCGATGGCCCGCAAGCCTGACGGTTCCGACCA GGCGCTGGTCGAGGTCAAGGCGGTCGACGACGCCTACCCGCTCTACGGCAGTTTCGTGGCCGAGCCGGACTATCCGCTGG CAGCCCTGCTTTCAGGCCAGGGCGGCACCTATGGCGCCGTCGCAGCCCCGCTGCTTCTCGATCGGCTCGGGCTTGCGGTC GGCGATGAATTGCTGCTCGGCAACGTCAAGCTCAGCATCACCGGCACCGTCAAAACCGAGCCGGATGCGCTGTCGGAAGG TTTCGGCTTTGCACCGCGTCTACTGGTCAGCCGCCGGGCGCTCGAAGCCTCCGGGCTGATCCAGACGGGAAGCCTGGTCG AGCATGCCTACAAGATCCGGCTGGAAGACAAGGGCGCGATGTCGGGCATCCAGGCGCGCGCCGCCAAGGAATTTCCTTCC GCCGGCTGGGCTGTTCGCACCAGCGACCGCGCCGCCCCCTCGCTCACCGAAAACATCACCCGCTTCTCGCAGTTCCTGAC GCTGGTCGGCCTCACCGCGCTGATCGTCGGCGGCGTCGGCGTCGCCAATGCCGTACGCGCCTTCCTCGATTCCAAGCGCA CCACCATCGCAACCTTCAAATGCCTCGGTGCGCCGGCGCAGGTCGTCGTTCTGATCTATCTTTTCCAGATCGCCATCATC GCGCTCGGCGGCATCCTGATCGGCCTTCTCATCGGCGCGCTGTCGCCGATCTTCGCCGCCCAGTTTCTGGCGCAGTTCCT GCCGGTCTCGACGGCTCCGACGCTCTATCCCGGCGCCCTGCTGCTGGCGACGCTCTTCGGCATCCTGACGACGCTCGCCT TCGCCATCCTGCCGCTCGGCCATGCCCGCGAAGTGCCGGCGACCGCGCTTTTCCGCGAGCAGGGCTTCGAGGCCCGCCGC CTGCCGTCCTGGCCCTATATCCTGCTGGCCGCGCTGTTCATGGCCGCCCTTGCCGGCCTTGCCATCCTCACTGCCTATGA CCGCTTCATTGCCGTCGTCTTCGTCGGCGCGATCGTCTTCGCCTTCGTCGTGCTGCGCCTGGTCGCAGCAGCGATCGCCT GGCTTGCGCGCCGCAGCCCGCGAGTCAACTCGCCGGCATTGCGGCTTGCGATCGGCAACATCCACCGCCCCGGCGCATTG ACGCCCTCGGTCGTGCTCTCGCTCGGCCTCGGCCTGGCATTGCTGGTGACGCTGACGTTGATCGACGGAAACCTGCGCCA GCAGCTGACCGGCCGCATGAATGAGGGCGCGCCGAACTTCTTCTTCGTCGATATCCAGAGCGCCGAGGTCGATGCTTTCC GTGCTCTCGTCCAGGCGCAGGCGCCGAAGGGCAAGCTGATGGAAGTGCCGATGCTGCGCGGCCGCATCATCGCCTTCAAC GGCGAGGACGTCAGCAAGATGAACGTGCCGGCCGCCGGCCGCTGGGTGCTGAACGGCGATCGCGGCATCACCTACGCTGA CACCCTGCCGGAAAATGCCGCCCTGACCGACGGCAGCTGGTGGGACAAGGATTACAGCGGCGAGCCGCTCGTCTCCTTCT CCTCGGAAGAGGCGCACGAACTCGGCCTGAAGATCGGCGACAAGATTACCGTCAACGTGCTCGGCCGCAACATCACAGCG AAGATCGCCAATCTGCGCCGTGTCCAATGGGAATCGCTGTCGATCAATTTCGTCATGGTCTTCTCGCCGAATACCTTCCG CGGCGCCCCGCACGCGTGGCTGGCGACCTTGACCGATCCCGCCTCGACACCGGCCGAAGATGCGGCAATCCTGAAATCCG TCACCAACACCTATCCGACGATCACCAGCGTCCGCGTCAAGGACGCGATCGACATCGTCAACCAGCTGGTGGCGCAGCTT GCGACCGCAATCCGCGCCGCAGCCTCCGTCGCCCTCATCGCCTCGATCCTCGTCCTTGCCGGGGCGCTTGCCGCCGGAAA CCGGGCCCGCACCCACGACGCGGTGGTGCTGAAGACGCTCGGCGCCACCCGCGCCATGCTCATTCGCGCCTTCAGCTACG AATATCTGATCCTTGGGCTGGCGACCGCGATCTTCGCGCTGATGGCCGGCAGCGTTGCCGCCTGGTTCATCGTCGCCCGC ATCATGCGCCTGCCCTCGACCTTCCTGCCCGATGTGGCGGGGCTGACGCTGGTGACCGCGCTCGTGCTGACCGTCGGCAT CGGCCTCATCGGCACCTGGCGCATCCTCGGGCAGAAGGCGGCACCGGTTTTGCGTGAGCTTTGA
Upstream 100 bases:
>100_bases ACGACGTCTCGCTGGCAAACCGCTGCTCGCGCCAGATCCGTGTCCGTTCCGGCCGGATCGAAGGCGACAGCGCCGCCCGC CGCAGCGAGGCGGCAATCGC
Downstream 100 bases:
>100_bases CCGGCGAGCCGCGCCAAAACCCTTCACCTTACGGCGATTTAACCGGCCGGGCCTTTGCAACCCTCTTGTTTGCAAACGGC GAAAGCCTCATATTGTCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 847
Protein sequence:
>847_residues MNIITPRVSLAFRLALRELRGGIRGFYIFLACIALGTGAIAAVNSVSQSITDTIASQGQELLAGDVRFELNNREATPEEM AFLDGLGTVSVSTGLRSMARKPDGSDQALVEVKAVDDAYPLYGSFVAEPDYPLAALLSGQGGTYGAVAAPLLLDRLGLAV GDELLLGNVKLSITGTVKTEPDALSEGFGFAPRLLVSRRALEASGLIQTGSLVEHAYKIRLEDKGAMSGIQARAAKEFPS AGWAVRTSDRAAPSLTENITRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIATFKCLGAPAQVVVLIYLFQIAII ALGGILIGLLIGALSPIFAAQFLAQFLPVSTAPTLYPGALLLATLFGILTTLAFAILPLGHAREVPATALFREQGFEARR LPSWPYILLAALFMAALAGLAILTAYDRFIAVVFVGAIVFAFVVLRLVAAAIAWLARRSPRVNSPALRLAIGNIHRPGAL TPSVVLSLGLGLALLVTLTLIDGNLRQQLTGRMNEGAPNFFFVDIQSAEVDAFRALVQAQAPKGKLMEVPMLRGRIIAFN GEDVSKMNVPAAGRWVLNGDRGITYADTLPENAALTDGSWWDKDYSGEPLVSFSSEEAHELGLKIGDKITVNVLGRNITA KIANLRRVQWESLSINFVMVFSPNTFRGAPHAWLATLTDPASTPAEDAAILKSVTNTYPTITSVRVKDAIDIVNQLVAQL ATAIRAAASVALIASILVLAGALAAGNRARTHDAVVLKTLGATRAMLIRAFSYEYLILGLATAIFALMAGSVAAWFIVAR IMRLPSTFLPDVAGLTLVTALVLTVGIGLIGTWRILGQKAAPVLREL
Sequences:
>Translated_847_residues MNIITPRVSLAFRLALRELRGGIRGFYIFLACIALGTGAIAAVNSVSQSITDTIASQGQELLAGDVRFELNNREATPEEM AFLDGLGTVSVSTGLRSMARKPDGSDQALVEVKAVDDAYPLYGSFVAEPDYPLAALLSGQGGTYGAVAAPLLLDRLGLAV GDELLLGNVKLSITGTVKTEPDALSEGFGFAPRLLVSRRALEASGLIQTGSLVEHAYKIRLEDKGAMSGIQARAAKEFPS AGWAVRTSDRAAPSLTENITRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIATFKCLGAPAQVVVLIYLFQIAII ALGGILIGLLIGALSPIFAAQFLAQFLPVSTAPTLYPGALLLATLFGILTTLAFAILPLGHAREVPATALFREQGFEARR LPSWPYILLAALFMAALAGLAILTAYDRFIAVVFVGAIVFAFVVLRLVAAAIAWLARRSPRVNSPALRLAIGNIHRPGAL TPSVVLSLGLGLALLVTLTLIDGNLRQQLTGRMNEGAPNFFFVDIQSAEVDAFRALVQAQAPKGKLMEVPMLRGRIIAFN GEDVSKMNVPAAGRWVLNGDRGITYADTLPENAALTDGSWWDKDYSGEPLVSFSSEEAHELGLKIGDKITVNVLGRNITA KIANLRRVQWESLSINFVMVFSPNTFRGAPHAWLATLTDPASTPAEDAAILKSVTNTYPTITSVRVKDAIDIVNQLVAQL ATAIRAAASVALIASILVLAGALAAGNRARTHDAVVLKTLGATRAMLIRAFSYEYLILGLATAIFALMAGSVAAWFIVAR IMRLPSTFLPDVAGLTLVTALVLTVGIGLIGTWRILGQKAAPVLREL >Mature_847_residues MNIITPRVSLAFRLALRELRGGIRGFYIFLACIALGTGAIAAVNSVSQSITDTIASQGQELLAGDVRFELNNREATPEEM AFLDGLGTVSVSTGLRSMARKPDGSDQALVEVKAVDDAYPLYGSFVAEPDYPLAALLSGQGGTYGAVAAPLLLDRLGLAV GDELLLGNVKLSITGTVKTEPDALSEGFGFAPRLLVSRRALEASGLIQTGSLVEHAYKIRLEDKGAMSGIQARAAKEFPS AGWAVRTSDRAAPSLTENITRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIATFKCLGAPAQVVVLIYLFQIAII ALGGILIGLLIGALSPIFAAQFLAQFLPVSTAPTLYPGALLLATLFGILTTLAFAILPLGHAREVPATALFREQGFEARR LPSWPYILLAALFMAALAGLAILTAYDRFIAVVFVGAIVFAFVVLRLVAAAIAWLARRSPRVNSPALRLAIGNIHRPGAL TPSVVLSLGLGLALLVTLTLIDGNLRQQLTGRMNEGAPNFFFVDIQSAEVDAFRALVQAQAPKGKLMEVPMLRGRIIAFN GEDVSKMNVPAAGRWVLNGDRGITYADTLPENAALTDGSWWDKDYSGEPLVSFSSEEAHELGLKIGDKITVNVLGRNITA KIANLRRVQWESLSINFVMVFSPNTFRGAPHAWLATLTDPASTPAEDAAILKSVTNTYPTITSVRVKDAIDIVNQLVAQL ATAIRAAASVALIASILVLAGALAAGNRARTHDAVVLKTLGATRAMLIRAFSYEYLILGLATAIFALMAGSVAAWFIVAR IMRLPSTFLPDVAGLTLVTALVLTVGIGLIGTWRILGQKAAPVLREL
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=812, Percent_Identity=25.4926108374384, Blast_Score=172, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89737; Mature: 89737
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIITPRVSLAFRLALRELRGGIRGFYIFLACIALGTGAIAAVNSVSQSITDTIASQGQE CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHH LLAGDVRFELNNREATPEEMAFLDGLGTVSVSTGLRSMARKPDGSDQALVEVKAVDDAYP HHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC LYGSFVAEPDYPLAALLSGQGGTYGAVAAPLLLDRLGLAVGDELLLGNVKLSITGTVKTE CCCCCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEEECCC PDALSEGFGFAPRLLVSRRALEASGLIQTGSLVEHAYKIRLEDKGAMSGIQARAAKEFPS CHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHCCC AGWAVRTSDRAAPSLTENITRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIATFK CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHH CLGAPAQVVVLIYLFQIAIIALGGILIGLLIGALSPIFAAQFLAQFLPVSTAPTLYPGAL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LLATLFGILTTLAFAILPLGHAREVPATALFREQGFEARRLPSWPYILLAALFMAALAGL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH AILTAYDRFIAVVFVGAIVFAFVVLRLVAAAIAWLARRSPRVNSPALRLAIGNIHRPGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC TPSVVLSLGLGLALLVTLTLIDGNLRQQLTGRMNEGAPNFFFVDIQSAEVDAFRALVQAQ CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHC APKGKLMEVPMLRGRIIAFNGEDVSKMNVPAAGRWVLNGDRGITYADTLPENAALTDGSW CCCCCCEECCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCC WDKDYSGEPLVSFSSEEAHELGLKIGDKITVNVLGRNITAKIANLRRVQWESLSINFVMV CCCCCCCCCCEECCCCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEEEEE FSPNTFRGAPHAWLATLTDPASTPAEDAAILKSVTNTYPTITSVRVKDAIDIVNQLVAQL ECCCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHH ATAIRAAASVALIASILVLAGALAAGNRARTHDAVVLKTLGATRAMLIRAFSYEYLILGL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATAIFALMAGSVAAWFIVARIMRLPSTFLPDVAGLTLVTALVLTVGIGLIGTWRILGQKA HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APVLREL HHHHHCC >Mature Secondary Structure MNIITPRVSLAFRLALRELRGGIRGFYIFLACIALGTGAIAAVNSVSQSITDTIASQGQE CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHH LLAGDVRFELNNREATPEEMAFLDGLGTVSVSTGLRSMARKPDGSDQALVEVKAVDDAYP HHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC LYGSFVAEPDYPLAALLSGQGGTYGAVAAPLLLDRLGLAVGDELLLGNVKLSITGTVKTE CCCCCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEEECCC PDALSEGFGFAPRLLVSRRALEASGLIQTGSLVEHAYKIRLEDKGAMSGIQARAAKEFPS CHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHCCC AGWAVRTSDRAAPSLTENITRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIATFK CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHH CLGAPAQVVVLIYLFQIAIIALGGILIGLLIGALSPIFAAQFLAQFLPVSTAPTLYPGAL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LLATLFGILTTLAFAILPLGHAREVPATALFREQGFEARRLPSWPYILLAALFMAALAGL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH AILTAYDRFIAVVFVGAIVFAFVVLRLVAAAIAWLARRSPRVNSPALRLAIGNIHRPGAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC TPSVVLSLGLGLALLVTLTLIDGNLRQQLTGRMNEGAPNFFFVDIQSAEVDAFRALVQAQ CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHC APKGKLMEVPMLRGRIIAFNGEDVSKMNVPAAGRWVLNGDRGITYADTLPENAALTDGSW CCCCCCEECCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCC WDKDYSGEPLVSFSSEEAHELGLKIGDKITVNVLGRNITAKIANLRRVQWESLSINFVMV CCCCCCCCCCEECCCCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEEEEE FSPNTFRGAPHAWLATLTDPASTPAEDAAILKSVTNTYPTITSVRVKDAIDIVNQLVAQL ECCCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHH ATAIRAAASVALIASILVLAGALAAGNRARTHDAVVLKTLGATRAMLIRAFSYEYLILGL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATAIFALMAGSVAAWFIVARIMRLPSTFLPDVAGLTLVTALVLTVGIGLIGTWRILGQKA HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APVLREL HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]