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The map label for this gene is atpD [H]

Identifier: 209551224

GI number: 209551224

Start: 3779798

End: 3781234

Strand: Reverse

Name: atpD [H]

Synonym: Rleg2_3652

Alternate gene names: 209551224

Gene position: 3781234-3779798 (Counterclockwise)

Preceding gene: 209551225

Following gene: 209551223

Centisome position: 83.32

GC content: 62.21

Gene sequence:

>1437_bases
ATGGCTGAGGCAGCTACCCCCAAGATCGGCTCTGTCGGCAGGGTCACACAGGTTATCGGCGCCGTCGTCGACGTTGCTTT
CGAAGGCGAACTGCCGAAGATCCTGAACGCGCTGGAAACCACCAACAACGGCGTCCGTCTGGTTCTCGAAGTTGCGCAGC
ACCTTGGCGAGAACGAAGTCCGGACGATCGCGATGGACTCGAGCGAAGGTCTCGTGCGCGGCCAGGAAGTCAGCGATACC
GGTGCTCCGATCATGGTTCCGGTCGGCAACGAGACGCTCGGCCGTATCATGAACGTCATCGGCGAGCCGGTCGACGAAGC
AGGCCCGCTGGTCACCGCGCACAAGCGCGCCATCCACCAGGATGCGCCGTCCTATGTCGAGCAGTCGACGGAAGCACAGA
TCCTCGTCACCGGCATCAAGGTCGTCGACCTTCTGGCGCCTTATGCACGCGGCGGCAAGATCGGCCTGTTCGGTGGCGCC
GGCGTCGGCAAGACCGTTCTGATCATGGAATTGATCAACAACGTCGCCAAGGCGCATGGTGGTTACTCGGTTTTCGCGGG
CGTCGGTGAACGCACCCGCGAAGGCAACGACCTTTACCACGAAATGATCGAATCGAACGTCAACAAGCATGGCGGCGGCG
AAGGCTCCAAGGCTGCGCTGGTTTACGGCCAGATGAACGAACCGCCGGGTGCGCGCGCCCGAGTCGCGCTGACCGGCCTG
ACGGTCGCCGAACATTTCCGCGACCAGGGCCAGGACGTTCTGTTCTTCGTCGACAATATCTTCCGCTTCACCCAGGCAGG
TTCCGAAGTGTCGGCTTTGCTCGGCCGCATCCCGTCGGCCGTCGGTTATCAGCCGACGCTTGCAACCGACATGGGCCAGA
TGCAGGAACGCATCACCACGACGACGACCGGCTCGATCACCTCGGTCCAGGCCATTTACGTTCCGGCCGACGACTTGACC
GACCCGGCGCCGGCAACCTCGTTCGCGCATCTTGACGCGACGACGGTTCTGTCGCGCTCGATCGCTGAAAAGGGCATCTA
CCCGGCCGTCGACCCGCTCGACTCGACCTCGCGCATGCTCGACCCGATGGTCGTCGGCGAAGAGCATTACGAAGTCGCCC
GTAAGGTCCAGTCGACGCTGCAGCGCTACAAGGCCCTGCAGGACATCATCGCCATCCTGGGCATGGACGAACTGTCCGAA
GAGGACAAGATTGCCGTTGCCCGCGCCCGCAAGATCGAGCGTTTCCTGTCGCAGCCGTTCTTCGTTGCCGAAGTCTTCAC
CGGCTCGCCGGGCAAGCTGGTTGCTCTCGAAGACACGATCAAGGGCTTCAAGGGCCTGGTCAACGGCGAATACGATCACC
TGCCGGAAGCTGCCTTCTACATGGTCGGCTCGATGGAAGAAGCGATCGAAAAGGCCAAGAAGCTCGCAGCGGCTTAA

Upstream 100 bases:

>100_bases
TGAGCTACAACCGCCAGCGTCAGGCGCAGATCACCAAGGAACTCATTGAAATCATTTCGGGCGCGGAAGCGCTCTGAGGC
TAGGAAAAGAGGGTCAGAAA

Downstream 100 bases:

>100_bases
TGAGCGACGCGCTAGACGAGATATTCTGCTGCGATTCCCTGAAAGGGGTCGTGGCGGATCTTCCGGAACCAGCCGCGCCC
ACCATCTATCGCGCCGATAA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MAEAATPKIGSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEVRTIAMDSSEGLVRGQEVSDT
GAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGA
GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGSKAALVYGQMNEPPGARARVALTGL
TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTTTTGSITSVQAIYVPADDLT
DPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEVARKVQSTLQRYKALQDIIAILGMDELSE
EDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEYDHLPEAAFYMVGSMEEAIEKAKKLAAA

Sequences:

>Translated_478_residues
MAEAATPKIGSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEVRTIAMDSSEGLVRGQEVSDT
GAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGA
GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGSKAALVYGQMNEPPGARARVALTGL
TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTTTTGSITSVQAIYVPADDLT
DPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEVARKVQSTLQRYKALQDIIAILGMDELSE
EDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEYDHLPEAAFYMVGSMEEAIEKAKKLAAA
>Mature_477_residues
AEAATPKIGSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEVRTIAMDSSEGLVRGQEVSDTG
APIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAG
VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGSKAALVYGQMNEPPGARARVALTGLT
VAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTTTTGSITSVQAIYVPADDLTD
PAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEVARKVQSTLQRYKALQDIIAILGMDELSEE
DKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEYDHLPEAAFYMVGSMEEAIEKAKKLAAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=473, Percent_Identity=78.8583509513742, Blast_Score=739, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=28.1456953642384, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI50345984, Length=297, Percent_Identity=25.5892255892256, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4757810, Length=297, Percent_Identity=25.5892255892256, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI19913428, Length=373, Percent_Identity=26.0053619302949, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI19913426, Length=373, Percent_Identity=26.0053619302949, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=71.4592274678112, Blast_Score=673, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=360, Percent_Identity=29.1666666666667, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790172, Length=435, Percent_Identity=24.8275862068966, Blast_Score=108, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=76.5591397849462, Blast_Score=722, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=28.8079470198675, Blast_Score=118, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI71988080, Length=320, Percent_Identity=24.0625, Blast_Score=102, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=320, Percent_Identity=24.0625, Blast_Score=101, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17510931, Length=356, Percent_Identity=24.1573033707865, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=356, Percent_Identity=24.7191011235955, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=23.1617647058824, Blast_Score=81, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=459, Percent_Identity=76.0348583877996, Blast_Score=703, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=368, Percent_Identity=26.6304347826087, Blast_Score=106, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319370, Length=405, Percent_Identity=25.1851851851852, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=250, Percent_Identity=26.8, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=79.1397849462366, Blast_Score=736, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=70.9129511677282, Blast_Score=672, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=72.2222222222222, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI20129479, Length=320, Percent_Identity=27.8125, Blast_Score=118, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24583988, Length=304, Percent_Identity=29.2763157894737, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583986, Length=304, Percent_Identity=29.2763157894737, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583984, Length=304, Percent_Identity=29.2763157894737, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583992, Length=307, Percent_Identity=27.6872964169381, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI281361666, Length=359, Percent_Identity=24.7910863509749, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24646341, Length=359, Percent_Identity=24.7910863509749, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136796, Length=359, Percent_Identity=24.7910863509749, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24658560, Length=320, Percent_Identity=24.375, Blast_Score=95, Evalue=9e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50975; Mature: 50843

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAATPKIGSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEV
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE
RTIAMDSSEGLVRGQEVSDTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQ
EEEEECCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHHH
DAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAHG
CCHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
GYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGSKAALVYGQMNEPPGARARVALTGL
CEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHH
TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITT
HHHHHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHH
TTTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRML
CCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
DPMVVGEEHYEVARKVQSTLQRYKALQDIIAILGMDELSEEDKIAVARARKIERFLSQPF
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCE
FVAEVFTGSPGKLVALEDTIKGFKGLVNGEYDHLPEAAFYMVGSMEEAIEKAKKLAAA
EEEEEEECCCCCEEEEHHHHHHHHHHCCCCHHCCCHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEAATPKIGSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE
RTIAMDSSEGLVRGQEVSDTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQ
EEEEECCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHCCCCHHHHHHHHHH
DAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNVAKAHG
CCHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
GYSVFAGVGERTREGNDLYHEMIESNVNKHGGGEGSKAALVYGQMNEPPGARARVALTGL
CEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHH
TVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITT
HHHHHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHH
TTTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRML
CCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
DPMVVGEEHYEVARKVQSTLQRYKALQDIIAILGMDELSEEDKIAVARARKIERFLSQPF
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCE
FVAEVFTGSPGKLVALEDTIKGFKGLVNGEYDHLPEAAFYMVGSMEEAIEKAKKLAAA
EEEEEEECCCCCEEEEHHHHHHHHHHCCCCHHCCCHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA