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The map label for this gene is yfjP [H]

Identifier: 209551130

GI number: 209551130

Start: 3683422

End: 3684066

Strand: Reverse

Name: yfjP [H]

Synonym: Rleg2_3554

Alternate gene names: 209551130

Gene position: 3684066-3683422 (Counterclockwise)

Preceding gene: 209551132

Following gene: 209551129

Centisome position: 81.18

GC content: 68.22

Gene sequence:

>645_bases
GTGCAGATCATCCGCAACGAAGACGACGTCAGGCAAGGGCTCGAAGCGCTGCTTCGCCTCGATCCGCGGCTTGTGCCGAT
CGCGGCCGATGCCGGGCCTGTGCCGCTGCGGCTGCGCGAACCGGGTTTTGCCGGGCTTGCCCATATCATCGTCTCGCAAA
TGGTGTCGCGCGCCAGCGCCGAGGCGATCTGGCGGCGCATGCTGCCGGCGGACGGTCTCTTGACCGCCGAAGGCTACACG
CTGCTTCACGCCGAGGCCTGGCGCGACGTCGGCCTGTCGCGCGCCAAGGCCGAGACCCTGTCGCAGATCGCCGAAGCCGT
TGCCTCCGGCCGCCTCGATCTTTCCGGGCTCTGCCTGAAGCCGCCTGAAGAGGCGCTTGGCGAACTCACGGCGCTGAAGG
GTGTCGGTCCGTGGACGGCGGAGGTCTATCTGATGTTCTGCGGCGGCCATGCCGATGTGTTTCCGGCCGGTGATGTCGCG
CTGCAAAATGCCGTCGGTGCGGCATTCGGTCTCGCGGCGCGGCCTCAGGCAAAGGCCCTGACGGCGCTGGCGGAAGCCTG
GTCGCCGTGGCGCTCGGTGGCGGCACGGCTTTTCTGGGCCTATTACGCCACGAAAACGCGCCGAGACATGGTGCCGACCG
GCTGA

Upstream 100 bases:

>100_bases
GTTGGGGCTCGGCGCAAAACGAAAGACAGGTTTTTGACGCTCGCTCGTGGTCATGCTTTCTTCTGCCATGGATTTAGGTT
TCGAACCACTGCGAGGCGAT

Downstream 100 bases:

>100_bases
TCGGCAATACTCTTCAAATTGCCTTTATCCTCTGAATTTATTGGACTTCACAATCCTGTAACAACCGGCCTAATATACAG
GTGCAGATGCCGAATCGATC

Product: HhH-GPD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MQIIRNEDDVRQGLEALLRLDPRLVPIAADAGPVPLRLREPGFAGLAHIIVSQMVSRASAEAIWRRMLPADGLLTAEGYT
LLHAEAWRDVGLSRAKAETLSQIAEAVASGRLDLSGLCLKPPEEALGELTALKGVGPWTAEVYLMFCGGHADVFPAGDVA
LQNAVGAAFGLAARPQAKALTALAEAWSPWRSVAARLFWAYYATKTRRDMVPTG

Sequences:

>Translated_214_residues
MQIIRNEDDVRQGLEALLRLDPRLVPIAADAGPVPLRLREPGFAGLAHIIVSQMVSRASAEAIWRRMLPADGLLTAEGYT
LLHAEAWRDVGLSRAKAETLSQIAEAVASGRLDLSGLCLKPPEEALGELTALKGVGPWTAEVYLMFCGGHADVFPAGDVA
LQNAVGAAFGLAARPQAKALTALAEAWSPWRSVAARLFWAYYATKTRRDMVPTG
>Mature_214_residues
MQIIRNEDDVRQGLEALLRLDPRLVPIAADAGPVPLRLREPGFAGLAHIIVSQMVSRASAEAIWRRMLPADGLLTAEGYT
LLHAEAWRDVGLSRAKAETLSQIAEAVASGRLDLSGLCLKPPEEALGELTALKGVGPWTAEVYLMFCGGHADVFPAGDVA
LQNAVGAAFGLAARPQAKALTALAEAWSPWRSVAARLFWAYYATKTRRDMVPTG

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 22953; Mature: 22953

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIRNEDDVRQGLEALLRLDPRLVPIAADAGPVPLRLREPGFAGLAHIIVSQMVSRASA
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
EAIWRRMLPADGLLTAEGYTLLHAEAWRDVGLSRAKAETLSQIAEAVASGRLDLSGLCLK
HHHHHHHCCCCCEEECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPEEALGELTALKGVGPWTAEVYLMFCGGHADVFPAGDVALQNAVGAAFGLAARPQAKAL
CHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
TALAEAWSPWRSVAARLFWAYYATKTRRDMVPTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQIIRNEDDVRQGLEALLRLDPRLVPIAADAGPVPLRLREPGFAGLAHIIVSQMVSRASA
CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
EAIWRRMLPADGLLTAEGYTLLHAEAWRDVGLSRAKAETLSQIAEAVASGRLDLSGLCLK
HHHHHHHCCCCCEEECCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPEEALGELTALKGVGPWTAEVYLMFCGGHADVFPAGDVALQNAVGAAFGLAARPQAKAL
CHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
TALAEAWSPWRSVAARLFWAYYATKTRRDMVPTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]