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The map label for this gene is comF [H]

Identifier: 209551108

GI number: 209551108

Start: 3661005

End: 3661781

Strand: Reverse

Name: comF [H]

Synonym: Rleg2_3532

Alternate gene names: 209551108

Gene position: 3661781-3661005 (Counterclockwise)

Preceding gene: 209551110

Following gene: 209551107

Centisome position: 80.69

GC content: 63.19

Gene sequence:

>777_bases
ATGGGACCGATTGATTTCGAAAGACCGGCGGAGTTCTTGCGGGCGCAGCTCTTGCGGCCGTTTTCGGCGCTTGCCGATTT
CCTTTATCCGCCAGCCTGTTCCGTCTGCGGCATTTCCACCGGCGGCCATCGCGGCGTCTGCGCGAAATGCTGGTCCGGCA
TCCGTTTCATCGAACGGCCCTATTGCGAAGTGCTCGGCATTCCCTTCTCGCACGATCTCGGCGCCGGCATCCTCAGTGCC
GAGGCGATCGCCAACCCGCCGCCTTTCGACCGGCTGCGCTCGGCTGCAACCCACGACCATGCGGTGCGTGATCTCGTTCA
CGGATTGAAATATCGCGATCGCACCGATCTGGCGCCGATGATGGCCGCCTGGATGCTGCGCGCTTCCGACGGGACGGTCG
AAAGCTGCGATGCACTGATCCCGGTGCCGCTGCACCGCACCCGGATGCTGACGCGCAAATTCAACCAGGCAGCCGAACTT
GCCCGCCATATGGCAAGGCTGTCAGGCAAGCCTCTGCTCGCCGCCACGCTTATTCGCGTCAAGCGCACCAGCCAGCAGGT
CGGCCTCGGCGCGAAGGCGCGCGAGGACAATGTCAGGGGCGCTTTCGCGATTGCCAAGGGTTGCGAAAACGACATTTTCG
GCAAGCGCATCGTCCTTATCGACGACGTCTATACGACTGGAGCGACGGTTGCCGCGGCAAGCCGGACGCTGCGCAAGGCG
GGCGCCGCCGAGATCACGGTTTTGACCTTTGCAAGGGCTCTCTCCGAGCCTATATGA

Upstream 100 bases:

>100_bases
GTTTTGTCGAAGATCGTTTCCATGACGATGTCCTTAGTCCCGCTCCGTAGCAGCAGCAAGGCGATTTTCCTTTGGAGGAG
AACAGGCTAGTCTCGACGGC

Downstream 100 bases:

>100_bases
CAGAAATACCCGGCATCGGTCTGGAGAGATTATGGTACCCGTCACTATCTATACGCGGCAATTCTGCGGCTATTGCACCC
GCGCTAAGTCCCTTCTCGAA

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MGPIDFERPAEFLRAQLLRPFSALADFLYPPACSVCGISTGGHRGVCAKCWSGIRFIERPYCEVLGIPFSHDLGAGILSA
EAIANPPPFDRLRSAATHDHAVRDLVHGLKYRDRTDLAPMMAAWMLRASDGTVESCDALIPVPLHRTRMLTRKFNQAAEL
ARHMARLSGKPLLAATLIRVKRTSQQVGLGAKAREDNVRGAFAIAKGCENDIFGKRIVLIDDVYTTGATVAAASRTLRKA
GAAEITVLTFARALSEPI

Sequences:

>Translated_258_residues
MGPIDFERPAEFLRAQLLRPFSALADFLYPPACSVCGISTGGHRGVCAKCWSGIRFIERPYCEVLGIPFSHDLGAGILSA
EAIANPPPFDRLRSAATHDHAVRDLVHGLKYRDRTDLAPMMAAWMLRASDGTVESCDALIPVPLHRTRMLTRKFNQAAEL
ARHMARLSGKPLLAATLIRVKRTSQQVGLGAKAREDNVRGAFAIAKGCENDIFGKRIVLIDDVYTTGATVAAASRTLRKA
GAAEITVLTFARALSEPI
>Mature_257_residues
GPIDFERPAEFLRAQLLRPFSALADFLYPPACSVCGISTGGHRGVCAKCWSGIRFIERPYCEVLGIPFSHDLGAGILSAE
AIANPPPFDRLRSAATHDHAVRDLVHGLKYRDRTDLAPMMAAWMLRASDGTVESCDALIPVPLHRTRMLTRKFNQAAELA
RHMARLSGKPLLAATLIRVKRTSQQVGLGAKAREDNVRGAFAIAKGCENDIFGKRIVLIDDVYTTGATVAAASRTLRKAG
AAEITVLTFARALSEPI

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=232, Percent_Identity=28.8793103448276, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 28007; Mature: 27876

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPIDFERPAEFLRAQLLRPFSALADFLYPPACSVCGISTGGHRGVCAKCWSGIRFIERP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHCHHHHHCC
YCEVLGIPFSHDLGAGILSAEAIANPPPFDRLRSAATHDHAVRDLVHGLKYRDRTDLAPM
HHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MAAWMLRASDGTVESCDALIPVPLHRTRMLTRKFNQAAELARHMARLSGKPLLAATLIRV
HHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KRTSQQVGLGAKAREDNVRGAFAIAKGCENDIFGKRIVLIDDVYTTGATVAAASRTLRKA
HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCHHCCHHHHHHHHHHHHC
GAAEITVLTFARALSEPI
CCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GPIDFERPAEFLRAQLLRPFSALADFLYPPACSVCGISTGGHRGVCAKCWSGIRFIERP
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHCHHHHHCC
YCEVLGIPFSHDLGAGILSAEAIANPPPFDRLRSAATHDHAVRDLVHGLKYRDRTDLAPM
HHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
MAAWMLRASDGTVESCDALIPVPLHRTRMLTRKFNQAAELARHMARLSGKPLLAATLIRV
HHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KRTSQQVGLGAKAREDNVRGAFAIAKGCENDIFGKRIVLIDDVYTTGATVAAASRTLRKA
HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCHHCCHHHHHHHHHHHHC
GAAEITVLTFARALSEPI
CCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]