BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is ucpA [C]

Identifier: 209551086

GI number: 209551086

Start: 3628217

End: 3628924

Strand: Direct

Name: ucpA [C]

Synonym: Rleg2_3510

Alternate gene names: 209551086

Gene position: 3628217-3628924 (Clockwise)

Preceding gene: 209551085

Following gene: 209551087

Centisome position: 79.95

GC content: 66.53

Gene sequence:

>708_bases
ATGAACGACCAGAAAGCCGTGATCGTTACGGGAGCCGGCGGCAACCTCGGCAGCGCCGTTGTCCGTGAGCTTGCTGCCGG
CGGCGCAAAACTCGTCTGCATGAACCGTTCGAGCCAGGAGCTGGAAGCCTTGGCCGCCGATCTTCCCGCCTCTGCCGAGT
TTCTGTCGATCGCCGGAACGGATCTCACCGATTATGCCTCCTGCGCCGCAGCCGTCGCCCGGGCCGTCAAGCGTTTTGGC
GGTGTCGGTGCCCTGGTCAATACGGTCGGCGCCTTCCAGATGGGGCCGGTCGGGCCGGATGCACCTGCCCAATGGGAGAC
GATGATGAACGCGAACGCCCGCACCGCGCTGACGATCAGCGCCGCGGTTCTCCCGACCATGAAGGCATCAGGCTATGGCC
GCATCGTTCATGTCGCCGCCGCGCCCGGCCTGAAGGCCGGCCCCAATCAAGCCGCTTACGCTGCCTCGAAAGCCGCCGTC
ATCCGGCTGACGGAAGCGCTCGCCGCCGAATGCCGCGACGACCGCATCACCGCCAACTGCATCCTGCCTGGGACGATCGA
CACGCCTGAAAACCGCGCCGCTATGCCCAATGCGAAGACGGATGGCTGGGTCACGCCGCAATCGATCGCCCGCCTCATCG
CCTTCCTGATCTCGCCGGCCGCAGCCGTTGTCACCGGCGCGGCAATCCCGGCGACCGGTCGCGAATAA

Upstream 100 bases:

>100_bases
CGCGAGATCTCCGACCTTGACGCGGATGCGTGGGCTTGCGCTGCGGCGCAGCCTGGATCAACAATGCGCGCCAACAGGGA
CGGGCAGGAGATCGATTGCC

Downstream 100 bases:

>100_bases
CGGCAGGTGTGGTGCTCGGCGCCGCAACCCCGCATCGGGATTACTTTGCTAGGATCAGAAGGCGATGAAACGGCGGATTT
GCAAATTTTGGCCGGTGACA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNDQKAVIVTGAGGNLGSAVVRELAAGGAKLVCMNRSSQELEALAADLPASAEFLSIAGTDLTDYASCAAAVARAVKRFG
GVGALVNTVGAFQMGPVGPDAPAQWETMMNANARTALTISAAVLPTMKASGYGRIVHVAAAPGLKAGPNQAAYAASKAAV
IRLTEALAAECRDDRITANCILPGTIDTPENRAAMPNAKTDGWVTPQSIARLIAFLISPAAAVVTGAAIPATGRE

Sequences:

>Translated_235_residues
MNDQKAVIVTGAGGNLGSAVVRELAAGGAKLVCMNRSSQELEALAADLPASAEFLSIAGTDLTDYASCAAAVARAVKRFG
GVGALVNTVGAFQMGPVGPDAPAQWETMMNANARTALTISAAVLPTMKASGYGRIVHVAAAPGLKAGPNQAAYAASKAAV
IRLTEALAAECRDDRITANCILPGTIDTPENRAAMPNAKTDGWVTPQSIARLIAFLISPAAAVVTGAAIPATGRE
>Mature_235_residues
MNDQKAVIVTGAGGNLGSAVVRELAAGGAKLVCMNRSSQELEALAADLPASAEFLSIAGTDLTDYASCAAAVARAVKRFG
GVGALVNTVGAFQMGPVGPDAPAQWETMMNANARTALTISAAVLPTMKASGYGRIVHVAAAPGLKAGPNQAAYAASKAAV
IRLTEALAAECRDDRITANCILPGTIDTPENRAAMPNAKTDGWVTPQSIARLIAFLISPAAAVVTGAAIPATGRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=28.2786885245902, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=28.8617886178862, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI20149619, Length=188, Percent_Identity=32.4468085106383, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI19923817, Length=245, Percent_Identity=27.3469387755102, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4504505, Length=222, Percent_Identity=27.9279279279279, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI157739938, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=27.3092369477912, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI40254986, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=26.1603375527426, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=239, Percent_Identity=31.3807531380753, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=30.6122448979592, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789208, Length=242, Percent_Identity=28.099173553719, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=241, Percent_Identity=25.7261410788382, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=26.5193370165746, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787526, Length=241, Percent_Identity=24.4813278008299, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=23.3870967741935, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=31.1475409836066, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=225, Percent_Identity=28.4444444444444, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=26.8, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=26.2295081967213, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=23.0452674897119, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=26.7175572519084, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=243, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=29.0155440414508, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=218, Percent_Identity=24.7706422018349, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=243, Percent_Identity=25.1028806584362, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=31.4285714285714, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=27.8688524590164, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=244, Percent_Identity=25, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24643142, Length=212, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=25.6198347107438, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18859837, Length=221, Percent_Identity=27.1493212669683, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=25.130890052356, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23685; Mature: 23685

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQKAVIVTGAGGNLGSAVVRELAAGGAKLVCMNRSSQELEALAADLPASAEFLSIAGT
CCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCC
DLTDYASCAAAVARAVKRFGGVGALVNTVGAFQMGPVGPDAPAQWETMMNANARTALTIS
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEH
AAVLPTMKASGYGRIVHVAAAPGLKAGPNQAAYAASKAAVIRLTEALAAECRDDRITANC
HHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ILPGTIDTPENRAAMPNAKTDGWVTPQSIARLIAFLISPAAAVVTGAAIPATGRE
EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNDQKAVIVTGAGGNLGSAVVRELAAGGAKLVCMNRSSQELEALAADLPASAEFLSIAGT
CCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCEEEECCC
DLTDYASCAAAVARAVKRFGGVGALVNTVGAFQMGPVGPDAPAQWETMMNANARTALTIS
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEH
AAVLPTMKASGYGRIVHVAAAPGLKAGPNQAAYAASKAAVIRLTEALAAECRDDRITANC
HHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ILPGTIDTPENRAAMPNAKTDGWVTPQSIARLIAFLISPAAAVVTGAAIPATGRE
EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA