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The map label for this gene is acoR [H]

Identifier: 209551081

GI number: 209551081

Start: 3623661

End: 3624620

Strand: Direct

Name: acoR [H]

Synonym: Rleg2_3505

Alternate gene names: 209551081

Gene position: 3623661-3624620 (Clockwise)

Preceding gene: 209551079

Following gene: 209551082

Centisome position: 79.85

GC content: 66.04

Gene sequence:

>960_bases
ATGCACGAACACTCAGCACATGCCGAGCATGTCTACACCTCTGCCCAGCGCGATTCCGCCGCGGCCAGTTCTCCCGTTGT
CGCCTCCTGGCGGCGATGCATGACCATGCATCAGCTCGCTCCGGAAGACGAACGGGCGCCACTGCGCGTTACCGATGAGG
AATTCCGCCGTGCCCGCGAACAGTCCGGGCAGCTGATCGCCAGCGCGACCGAAGAGCTCGATCGTCTCTTTACCACCGTC
GGCAAAGCCGGCTGCTGTCTGCTTCTGACCGACAGGAACGGCATTGCATTGGAGCGTCGGGGGGCTGCCGGCGACGACAA
GGAGTTCCACAAACTCGGCCTATGGACCGGCTCCGTCTGGACCGAGGCGAGCATCGGCACCAACGGCATCGGCACCGCGC
TTGCCGACGAGCGTGCCGTCGCCATCTTCCGCGACCAGCATTTCTTCTGCGCCAATACCAGCCTCAGCTGCACCACGGCA
CCGATCCGCGATCACCGTGGCCGGGTGGCAGCGGCCCTCGATATTTCCACCTGCCGTGAAGATGTCAACGAGATGACGCT
GACGATCCTGACGCAGACCGTGCGCGACGCGGCGATGCGCATCGAGCTCAACCTCTTCCGCTCGGCTTTTCCCAGCGCCC
GTTTCCTGATGGTCCCGGCCGGCGCCAATTCCGCCGCCGCCCTGCTTGCCGTCGACCGGCATGACCTCGTGCTCGGGGCG
ACACGCGCCGCCCGCATCGCACTGCAGCTGGACGACAAGCGGATCGCCGCCGGCATTCCGGCGGCCGATGCCCTGCATGA
GGCCGGAGTCTCGCAGCAGGAGGAGATCGTCGAAGCGGAAAAGGCAGCCCTGTTGCGGGCGCTGTCGCGCACCAGCGGCA
ACGTCTCGCAGGCGGCCGTCGCCCTCGGCATTAGCCGCGCCACCCTGCATCGGAAGATGAAGAAGTTCGACCTGCACTGA

Upstream 100 bases:

>100_bases
TCGTCTGAAAAAGCCGCAGGCCAATGGCCGTCCGGGACCGGCCGATTGCAAACCGGCCGCTTTTCCCTCAGACTATGCTG
AAGTTCCGTGGGAGGAGCCG

Downstream 100 bases:

>100_bases
CGAATGCATGTCGCCCGGAAGTGTGCAGCGGTGCCGGGATAACGACATGCATCAAAACAAAGAGCTAAAGCCCGAACGTT
CCACCGACACCGTCGATCGT

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MHEHSAHAEHVYTSAQRDSAAASSPVVASWRRCMTMHQLAPEDERAPLRVTDEEFRRAREQSGQLIASATEELDRLFTTV
GKAGCCLLLTDRNGIALERRGAAGDDKEFHKLGLWTGSVWTEASIGTNGIGTALADERAVAIFRDQHFFCANTSLSCTTA
PIRDHRGRVAAALDISTCREDVNEMTLTILTQTVRDAAMRIELNLFRSAFPSARFLMVPAGANSAAALLAVDRHDLVLGA
TRAARIALQLDDKRIAAGIPAADALHEAGVSQQEEIVEAEKAALLRALSRTSGNVSQAAVALGISRATLHRKMKKFDLH

Sequences:

>Translated_319_residues
MHEHSAHAEHVYTSAQRDSAAASSPVVASWRRCMTMHQLAPEDERAPLRVTDEEFRRAREQSGQLIASATEELDRLFTTV
GKAGCCLLLTDRNGIALERRGAAGDDKEFHKLGLWTGSVWTEASIGTNGIGTALADERAVAIFRDQHFFCANTSLSCTTA
PIRDHRGRVAAALDISTCREDVNEMTLTILTQTVRDAAMRIELNLFRSAFPSARFLMVPAGANSAAALLAVDRHDLVLGA
TRAARIALQLDDKRIAAGIPAADALHEAGVSQQEEIVEAEKAALLRALSRTSGNVSQAAVALGISRATLHRKMKKFDLH
>Mature_319_residues
MHEHSAHAEHVYTSAQRDSAAASSPVVASWRRCMTMHQLAPEDERAPLRVTDEEFRRAREQSGQLIASATEELDRLFTTV
GKAGCCLLLTDRNGIALERRGAAGDDKEFHKLGLWTGSVWTEASIGTNGIGTALADERAVAIFRDQHFFCANTSLSCTTA
PIRDHRGRVAAALDISTCREDVNEMTLTILTQTVRDAAMRIELNLFRSAFPSARFLMVPAGANSAAALLAVDRHDLVLGA
TRAARIALQLDDKRIAAGIPAADALHEAGVSQQEEIVEAEKAALLRALSRTSGNVSQAAVALGISRATLHRKMKKFDLH

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 34573; Mature: 34573

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEHSAHAEHVYTSAQRDSAAASSPVVASWRRCMTMHQLAPEDERAPLRVTDEEFRRARE
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHH
QSGQLIASATEELDRLFTTVGKAGCCLLLTDRNGIALERRGAAGDDKEFHKLGLWTGSVW
HCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCHHHHEECEECCCE
TEASIGTNGIGTALADERAVAIFRDQHFFCANTSLSCTTAPIRDHRGRVAAALDISTCRE
EECCCCCCCCCHHHCCCCEEEEEECCEEEEECCCCCEEECCCHHCCCCEEEEEEHHHHHH
DVNEMTLTILTQTVRDAAMRIELNLFRSAFPSARFLMVPAGANSAAALLAVDRHDLVLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCEEEEC
TRAARIALQLDDKRIAAGIPAADALHEAGVSQQEEIVEAEKAALLRALSRTSGNVSQAAV
HHHEEEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALGISRATLHRKMKKFDLH
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHEHSAHAEHVYTSAQRDSAAASSPVVASWRRCMTMHQLAPEDERAPLRVTDEEFRRARE
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHH
QSGQLIASATEELDRLFTTVGKAGCCLLLTDRNGIALERRGAAGDDKEFHKLGLWTGSVW
HCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCHHHHEECEECCCE
TEASIGTNGIGTALADERAVAIFRDQHFFCANTSLSCTTAPIRDHRGRVAAALDISTCRE
EECCCCCCCCCHHHCCCCEEEEEECCEEEEECCCCCEEECCCHHCCCCEEEEEEHHHHHH
DVNEMTLTILTQTVRDAAMRIELNLFRSAFPSARFLMVPAGANSAAALLAVDRHDLVLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCEEEEC
TRAARIALQLDDKRIAAGIPAADALHEAGVSQQEEIVEAEKAALLRALSRTSGNVSQAAV
HHHEEEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALGISRATLHRKMKKFDLH
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]