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The map label for this gene is ydcS [H]

Identifier: 209550999

GI number: 209550999

Start: 3540127

End: 3541287

Strand: Direct

Name: ydcS [H]

Synonym: Rleg2_3423

Alternate gene names: 209550999

Gene position: 3540127-3541287 (Clockwise)

Preceding gene: 209550998

Following gene: 209551000

Centisome position: 78.01

GC content: 61.93

Gene sequence:

>1161_bases
ATGACGCATCTCTTGAAATCCTGCACGGCAGCGCTCGCCTGCCTGAGCTTCGCGACGCAGGTGATTGCCGCCGAGCCGCT
GAAGGCGCTCGGCAAGGGCGAAGGAGCGGTCAGCATTGTCGCTTGGGCCGGCTATATCGAACGCGGCGAAACCGACAAGA
ACTACGACTGGGTGAGCGATTTCGAAAAGGAGACCGGCTGCAAGGTTTCCGTCAAGACCGCCGCCACCTCGGATGAAATG
GTATCGCTGATGAACGAGGGCGGCTTCGACCTCGTCACCGCATCGGGCGACGCGTCGCTCCGCCTCATCGCCGGCAAGCG
TGTCCAGCCGATCAACACCGATCTGATCCCGAGCTTCAAGACGGTCGACGAGCGCCTGCAGAAAGGTCCGTGGTATACGG
TCGGCGACGTGCATTACGGCGTGCCCTATCTCTGGGGGCCGAATGTGCTGATGTATAATACCGATGCCTTCAAGGACAAG
GCGCCGACCAGCTGGAATGTCGTCTTCGAGGAGCAGACCCTGCCCGACGGCAAGTCGAACAAGGGCCGCGTCCAGGCCTA
TGACGGCGCAATCTATATCGCCGACGCCGCCCTGTACCTGATGGCCCACAAGCCGGATCTCGGCATCAAGGACCCTTACG
AACTGACTGAAGACCAGTACAAGGCGGCCCTCGACCTGCTGCGCGGCCAGCGCAAGCTCGTCTCCCGCTACTGGCACGAT
GCGATGATCCAGATCGACGACTTCAAGAATGAAGGCGTCGTCGCCTCCGGCTCCTGGCCTTTCCAGGTCAACCTGCTGCA
GGCCGACAAGCAGAAGATCGCCTCCACATTCCCGGATGAAGGCGTCACCGGCTGGGCCGACACCACCATGCTGCATGTCG
ACAGCGAACATCCGAACTGCGCCTATATGTGGATGGAGCATTCGCTGCAGGCCAAGGTCCAGGGCGACGCCGCCGCCTGG
TTCGGCGCCGTGCCCTCGGTTCCCGCCGCCTGCAAGGGCAACGAACTGATGGGCGACGCCGGCTGCGCCACCAACGGCTT
CGATCACTTCGACAAGATCAAGTTCTGGAAAACCCCGGTCGCCAAATGCACGACGCAGAGCGAATGCGTGCCCTATCATC
GCTGGGTGTCGGATTATATCGGCGTGATCGGCGGGCGGTAA

Upstream 100 bases:

>100_bases
CCTTTCTGATAAATGAATTTGCGAAAGCGGCCTTTTCGCGTCACCTTCTTCCGAGGGAACAAACCGCCACGGAAAGTGGC
ACCAGACCGGGAGACGGATG

Downstream 100 bases:

>100_bases
TTGCGTCAAGCCCCTCACCCTAACCCTCTCCCCGCTTGCGGGGAGAGGGGACGTGCCCTGCGACAAGCCTGTGAACGAAA
GCAGCGCCACGAGTCACCTT

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MTHLLKSCTAALACLSFATQVIAAEPLKALGKGEGAVSIVAWAGYIERGETDKNYDWVSDFEKETGCKVSVKTAATSDEM
VSLMNEGGFDLVTASGDASLRLIAGKRVQPINTDLIPSFKTVDERLQKGPWYTVGDVHYGVPYLWGPNVLMYNTDAFKDK
APTSWNVVFEEQTLPDGKSNKGRVQAYDGAIYIADAALYLMAHKPDLGIKDPYELTEDQYKAALDLLRGQRKLVSRYWHD
AMIQIDDFKNEGVVASGSWPFQVNLLQADKQKIASTFPDEGVTGWADTTMLHVDSEHPNCAYMWMEHSLQAKVQGDAAAW
FGAVPSVPAACKGNELMGDAGCATNGFDHFDKIKFWKTPVAKCTTQSECVPYHRWVSDYIGVIGGR

Sequences:

>Translated_386_residues
MTHLLKSCTAALACLSFATQVIAAEPLKALGKGEGAVSIVAWAGYIERGETDKNYDWVSDFEKETGCKVSVKTAATSDEM
VSLMNEGGFDLVTASGDASLRLIAGKRVQPINTDLIPSFKTVDERLQKGPWYTVGDVHYGVPYLWGPNVLMYNTDAFKDK
APTSWNVVFEEQTLPDGKSNKGRVQAYDGAIYIADAALYLMAHKPDLGIKDPYELTEDQYKAALDLLRGQRKLVSRYWHD
AMIQIDDFKNEGVVASGSWPFQVNLLQADKQKIASTFPDEGVTGWADTTMLHVDSEHPNCAYMWMEHSLQAKVQGDAAAW
FGAVPSVPAACKGNELMGDAGCATNGFDHFDKIKFWKTPVAKCTTQSECVPYHRWVSDYIGVIGGR
>Mature_385_residues
THLLKSCTAALACLSFATQVIAAEPLKALGKGEGAVSIVAWAGYIERGETDKNYDWVSDFEKETGCKVSVKTAATSDEMV
SLMNEGGFDLVTASGDASLRLIAGKRVQPINTDLIPSFKTVDERLQKGPWYTVGDVHYGVPYLWGPNVLMYNTDAFKDKA
PTSWNVVFEEQTLPDGKSNKGRVQAYDGAIYIADAALYLMAHKPDLGIKDPYELTEDQYKAALDLLRGQRKLVSRYWHDA
MIQIDDFKNEGVVASGSWPFQVNLLQADKQKIASTFPDEGVTGWADTTMLHVDSEHPNCAYMWMEHSLQAKVQGDAAAWF
GAVPSVPAACKGNELMGDAGCATNGFDHFDKIKFWKTPVAKCTTQSECVPYHRWVSDYIGVIGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=378, Percent_Identity=64.2857142857143, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1787078, Length=331, Percent_Identity=26.5861027190332, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42461; Mature: 42330

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHLLKSCTAALACLSFATQVIAAEPLKALGKGEGAVSIVAWAGYIERGETDKNYDWVSD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCCCCCHHHH
FEKETGCKVSVKTAATSDEMVSLMNEGGFDLVTASGDASLRLIAGKRVQPINTDLIPSFK
HHHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH
TVDERLQKGPWYTVGDVHYGVPYLWGPNVLMYNTDAFKDKAPTSWNVVFEEQTLPDGKSN
HHHHHHHCCCCEEECCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
KGRVQAYDGAIYIADAALYLMAHKPDLGIKDPYELTEDQYKAALDLLRGQRKLVSRYWHD
CCEEEEECCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIQIDDFKNEGVVASGSWPFQVNLLQADKQKIASTFPDEGVTGWADTTMLHVDSEHPNC
HEEEEECCCCCCEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCE
AYMWMEHSLQAKVQGDAAAWFGAVPSVPAACKGNELMGDAGCATNGFDHFDKIKFWKTPV
EEEEEECCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCH
AKCTTQSECVPYHRWVSDYIGVIGGR
HHCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
THLLKSCTAALACLSFATQVIAAEPLKALGKGEGAVSIVAWAGYIERGETDKNYDWVSD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCCCCCHHHH
FEKETGCKVSVKTAATSDEMVSLMNEGGFDLVTASGDASLRLIAGKRVQPINTDLIPSFK
HHHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH
TVDERLQKGPWYTVGDVHYGVPYLWGPNVLMYNTDAFKDKAPTSWNVVFEEQTLPDGKSN
HHHHHHHCCCCEEECCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
KGRVQAYDGAIYIADAALYLMAHKPDLGIKDPYELTEDQYKAALDLLRGQRKLVSRYWHD
CCEEEEECCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMIQIDDFKNEGVVASGSWPFQVNLLQADKQKIASTFPDEGVTGWADTTMLHVDSEHPNC
HEEEEECCCCCCEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCE
AYMWMEHSLQAKVQGDAAAWFGAVPSVPAACKGNELMGDAGCATNGFDHFDKIKFWKTPV
EEEEEECCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCH
AKCTTQSECVPYHRWVSDYIGVIGGR
HHCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]