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The map label for this gene is ydeE [H]

Identifier: 209550993

GI number: 209550993

Start: 3532995

End: 3533834

Strand: Direct

Name: ydeE [H]

Synonym: Rleg2_3417

Alternate gene names: 209550993

Gene position: 3532995-3533834 (Clockwise)

Preceding gene: 209550992

Following gene: 209550994

Centisome position: 77.85

GC content: 61.19

Gene sequence:

>840_bases
ATGAGCGCCATCGCACGGGCGATATGGTTCATTGAGAGCCATTTCGAAAGCGATCTATCGCTGGAAGAGATATCGGAAGC
AGCCGGATTGTCGCGTTACCATCTGTCACGCGTCTTCGGGCTCGTCACCGGCCACTCGATCAGCGGCTATATCAGAGGGC
GGCGCCTCAGCCGCGCCTTGCCCGCGCTTGTCGGCGGCTCATCCACCATTCTCGAGGTTGCGCTTTGCGCGGGCTACGGC
TCCCACGAAGCTTTCACCCGTGCCTTCCGCGACCAGTTCGGCATGACGCCGGATGCGGTGCGCCGGCAGGGGCACGCCCG
TAATCTTGTCTTGCTGGAGCCGATCAGAATGGACCCCGCCCACCTCAACGACCTCGAACCACCCCGCTTCGAAAGCCTTC
AGCCGATGCTCTTTGCCGGCCTGCAGGAGATCTACCCCTATGGCGGCAATGCCGCCATTCCCTCGCTCTGGCAGAAGTTC
AATGCCCATTTCGGCCATATATCCAGCCAGAAAGGCAACGTCGCCTACGGCATCTGCACGCATATCGACGGCGAAGCGGA
GAAATTCCGCTATATGGCCGCGGCCGAAATCTCCGATGCCGGTGATCTGCCGGCGGATTTTACAACGCTCAAGCTTCCCG
GCCAGCGCTACGTCGTCTTCACTCATCGCGGCCATGTCTCCGGCATTCCCGCGACCATGCACCGGATTTTCGGCACATGG
TGGCCGACCTCCGGCCTGGAGCACGGCGAGACGCCCGACATGTTCGAACGCTACGACGAGCGTTTCGACCCCTATACCGG
CATGGGCGTCACCGAAATCTGGTTGCCGATCAAAGCATGA

Upstream 100 bases:

>100_bases
TCCTTGACGGCCGCTCCCGACCGGCCGAAACTCCGCAACAACGATCAAACCCGGCTGCCGGCATTTCTCTAAGAAGGAGC
GGTAACCAGGGGAGTAAAGG

Downstream 100 bases:

>100_bases
TGCCGAAAAGTGTGAGCGGTTTTCTCATGACATCATCCTGTTAGGGAATAAAAGTCACATCGATTGCGTATACCCCCTTG
CGGCGCTTGCGTGGCAGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSAIARAIWFIESHFESDLSLEEISEAAGLSRYHLSRVFGLVTGHSISGYIRGRRLSRALPALVGGSSTILEVALCAGYG
SHEAFTRAFRDQFGMTPDAVRRQGHARNLVLLEPIRMDPAHLNDLEPPRFESLQPMLFAGLQEIYPYGGNAAIPSLWQKF
NAHFGHISSQKGNVAYGICTHIDGEAEKFRYMAAAEISDAGDLPADFTTLKLPGQRYVVFTHRGHVSGIPATMHRIFGTW
WPTSGLEHGETPDMFERYDERFDPYTGMGVTEIWLPIKA

Sequences:

>Translated_279_residues
MSAIARAIWFIESHFESDLSLEEISEAAGLSRYHLSRVFGLVTGHSISGYIRGRRLSRALPALVGGSSTILEVALCAGYG
SHEAFTRAFRDQFGMTPDAVRRQGHARNLVLLEPIRMDPAHLNDLEPPRFESLQPMLFAGLQEIYPYGGNAAIPSLWQKF
NAHFGHISSQKGNVAYGICTHIDGEAEKFRYMAAAEISDAGDLPADFTTLKLPGQRYVVFTHRGHVSGIPATMHRIFGTW
WPTSGLEHGETPDMFERYDERFDPYTGMGVTEIWLPIKA
>Mature_278_residues
SAIARAIWFIESHFESDLSLEEISEAAGLSRYHLSRVFGLVTGHSISGYIRGRRLSRALPALVGGSSTILEVALCAGYGS
HEAFTRAFRDQFGMTPDAVRRQGHARNLVLLEPIRMDPAHLNDLEPPRFESLQPMLFAGLQEIYPYGGNAAIPSLWQKFN
AHFGHISSQKGNVAYGICTHIDGEAEKFRYMAAAEISDAGDLPADFTTLKLPGQRYVVFTHRGHVSGIPATMHRIFGTWW
PTSGLEHGETPDMFERYDERFDPYTGMGVTEIWLPIKA

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=266, Percent_Identity=31.203007518797, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87081928, Length=103, Percent_Identity=38.8349514563107, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=34.6938775510204, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31055; Mature: 30923

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIARAIWFIESHFESDLSLEEISEAAGLSRYHLSRVFGLVTGHSISGYIRGRRLSRAL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
PALVGGSSTILEVALCAGYGSHEAFTRAFRDQFGMTPDAVRRQGHARNLVLLEPIRMDPA
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCC
HLNDLEPPRFESLQPMLFAGLQEIYPYGGNAAIPSLWQKFNAHFGHISSQKGNVAYGICT
CCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEE
HIDGEAEKFRYMAAAEISDAGDLPADFTTLKLPGQRYVVFTHRGHVSGIPATMHRIFGTW
CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHCC
WPTSGLEHGETPDMFERYDERFDPYTGMGVTEIWLPIKA
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SAIARAIWFIESHFESDLSLEEISEAAGLSRYHLSRVFGLVTGHSISGYIRGRRLSRAL
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
PALVGGSSTILEVALCAGYGSHEAFTRAFRDQFGMTPDAVRRQGHARNLVLLEPIRMDPA
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCC
HLNDLEPPRFESLQPMLFAGLQEIYPYGGNAAIPSLWQKFNAHFGHISSQKGNVAYGICT
CCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEE
HIDGEAEKFRYMAAAEISDAGDLPADFTTLKLPGQRYVVFTHRGHVSGIPATMHRIFGTW
CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHCC
WPTSGLEHGETPDMFERYDERFDPYTGMGVTEIWLPIKA
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]