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The map label for this gene is yciR [C]

Identifier: 209550978

GI number: 209550978

Start: 3512878

End: 3515088

Strand: Reverse

Name: yciR [C]

Synonym: Rleg2_3402

Alternate gene names: 209550978

Gene position: 3515088-3512878 (Counterclockwise)

Preceding gene: 209550979

Following gene: 209550973

Centisome position: 77.46

GC content: 63.46

Gene sequence:

>2211_bases
ATGCAGACAGCCGGAAAGTCGCAGAGCAAGGGTTTGGGAGTAGGCCGTCACATCACCGTTACGGGCGTGCTTTTTTCCTT
TGCCGTCATCGTCGCAATTGTCACCGTCATGGTGCTGACGGCGCTCGAGCGCGTGGCCGAAAATGCCAATCTTCTCGATG
ACGAGCGCTCGCGCGAAACGACGATCGGGGCGTTGAAGACTTTCGAGGACCAGCTCGCCGCGACGCTCGACGATTACGCA
GCCTGGGACGATGCCGCCGTCAACGTCTATTCGCCCGACGGCATGGCCTGGACGGTGAGCAATTACGGCGAGATGTCGGT
CAACAGTTCGCTTTTCGACATGGCGATCGTCATCGATGACGGCAAGAAGCCGATCATGGCCTATCGCGACGGCAAGCCGA
TGGAGGAGCCGCTTGCGGATTTCTTCGCGCCGTCGCTCTGGACCCTGTTCGAGACGGCGAAGGCCGACACGGCCGGGACT
CCCCAAGCAGTCGGCTTTGTCACCACCAAACGCGGTATCGCCGCTGTCGGCGTCGCCCTGGTGCGGAAAAAATCCGGTGC
GCTGGATGCGCCGGCCGGCCAGCACCGCTATCTCGTCTTCGCCCGCCACCTCGACAATGACCGGGTGACCGCGCTCGGCC
AGACCTATGTCATCGGCGGGCTGAGGCTGGCGCCGGCGAGCTTCGAGGCCGATTATTTTGTGCCGATCGTCGATCCGACG
GGAACAACGCTTCAAAAGCTCGTTTGGACCTCGCGTTCGCCGGGTGATGTCGGCTACGCACAGGTGCGGCCGATGGTCCT
GCAAGCGCTCGGCCTTGTCGGGCTGTTCTTCGCGGTGCTGCTGGTCATCGGCTGGTTTGCCGGCCGCCGGCTGAAGGCCG
ATGAAAACAGCGCCCGCGAAGAGACGCTGCGCGACCGGCTGAGCGGCCTTTCCAATCGCGACGGTCTTGGGCTTGCTGTC
GACCGTTTCGTCGTCGAGGCGCGCCAGACCAAACGCAACGTGCTGCTCCTCTATCTCGACCTCGACGGTTTCAAGGAAGT
CAATGACAGTTATGGCCACGGCACCGGCGATCAGTTGATCCGCGGGGTGGCGGCCGGTCTCGACGTGCTTATTCCGCAAG
GCGCGGTTCTCGCCCGCATCGGCGGCGATGAATTTGCGATCGCCTTTCTCTCGGACGGCGAGAATGCTGCGGCCCTGCAA
CTTGCCGAGCAGATCCTTGATTTTCTGGTCGAGCCGCTGGAGATCGGTCGCCGCGTCGTTGTTGTCGGGGCCAGCATCGG
CATCGCCATGTCGCCTGCCGGCACGATCGGGCGCGAGGAACTGGTGCGCCGCTCCGACCTTGCCATGTACAAGGCGAAAG
AAGCCGGCCGTGCGCGCATGACGCTTTACGATCCGTCGATGGATGCCGACCGGGAGCAGCGCAATGCGCTGGAACTCGAC
CTCAGGATGGCCATCGAAAGCGGCGATCTGACGCTTGCCTACCAGCCGCTGATCGATGCGGCCTCCTATGCGCCGACCGG
CGTCGAGGCGCTGGTGCGCTGGAACCGTCCAGGTCATGGCCCTATCTCGCCTGAGGTGTTCATCCCGATCGCCGAGACCA
GCGGCCTCATCGAATCGCTCGGCCTGTTCGTGCTGCGCAAGGCCTGCGAGACAGCCAAGCAATGGCCGGAACTCAACGTT
TCGGTCAACGTCTCTCCCGGTCAGTTCCGCAATCCCGCCTTCGCCGATTATGTGCGCTACGTGCTGAAGCAGACGGAGGT
CGAGGCCGGCCGCATCACGCTCGAGATCACCGAAGGCTACATGATCCAGAATCCGCAGCGCACCCGCCAGTCGATCGAAC
GGCTGAAGGCGCTGGGGGTCAAGGTGGCGCTGGACGATTTCGGCTCCGGCTTCTCCTCTATCGGTTATCTCAGGCAGTTC
GGCTTCGACCGCATCAAGATCGACCGCTCACTGGTCATGGGGGTCAATGAGGACAAGCGCCAGCGCGAGATGCTGCAGGC
GACCGTGGCGCTTGCCCGCTCTCTCGACATTCCGGTGACGGCCGAGGGCATCGAGACCGAGGAGCAGGCAATCGCCATGC
GCCTCTTCGGCTGCGATTGCCTGCAGGGTTATCTGTTCGGAAAGCCGATGACGGCCGATCTGATCACCGAGATGCTGCAC
GCGCGGCATGCAGCCGAGCCGGAAGGCCGGCGCCGTCTTGGCGCAGCCTGA

Upstream 100 bases:

>100_bases
ATCAGCAGGCAAGAAATAGCTCCTCGCAAATCTTCAACAGGTGGTTGCTTAAACGTTTTTGAACCCTTGGCTGGCAAAGT
CGGACGGTCAGGGAGCCGTA

Downstream 100 bases:

>100_bases
CGGGCGCTGGTAGAGATTCACGAAAAATGGGGGCTGATCCGGAAAGGATACTGGCTCAGCTGCCGATATGCCGCTGGCCG
CGCTTCCTGGCGAGGGCGAT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 736; Mature: 736

Protein sequence:

>736_residues
MQTAGKSQSKGLGVGRHITVTGVLFSFAVIVAIVTVMVLTALERVAENANLLDDERSRETTIGALKTFEDQLAATLDDYA
AWDDAAVNVYSPDGMAWTVSNYGEMSVNSSLFDMAIVIDDGKKPIMAYRDGKPMEEPLADFFAPSLWTLFETAKADTAGT
PQAVGFVTTKRGIAAVGVALVRKKSGALDAPAGQHRYLVFARHLDNDRVTALGQTYVIGGLRLAPASFEADYFVPIVDPT
GTTLQKLVWTSRSPGDVGYAQVRPMVLQALGLVGLFFAVLLVIGWFAGRRLKADENSAREETLRDRLSGLSNRDGLGLAV
DRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQ
LAEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELD
LRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIPIAETSGLIESLGLFVLRKACETAKQWPELNV
SVNVSPGQFRNPAFADYVRYVLKQTEVEAGRITLEITEGYMIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQF
GFDRIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGYLFGKPMTADLITEMLH
ARHAAEPEGRRRLGAA

Sequences:

>Translated_736_residues
MQTAGKSQSKGLGVGRHITVTGVLFSFAVIVAIVTVMVLTALERVAENANLLDDERSRETTIGALKTFEDQLAATLDDYA
AWDDAAVNVYSPDGMAWTVSNYGEMSVNSSLFDMAIVIDDGKKPIMAYRDGKPMEEPLADFFAPSLWTLFETAKADTAGT
PQAVGFVTTKRGIAAVGVALVRKKSGALDAPAGQHRYLVFARHLDNDRVTALGQTYVIGGLRLAPASFEADYFVPIVDPT
GTTLQKLVWTSRSPGDVGYAQVRPMVLQALGLVGLFFAVLLVIGWFAGRRLKADENSAREETLRDRLSGLSNRDGLGLAV
DRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQ
LAEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELD
LRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIPIAETSGLIESLGLFVLRKACETAKQWPELNV
SVNVSPGQFRNPAFADYVRYVLKQTEVEAGRITLEITEGYMIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQF
GFDRIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGYLFGKPMTADLITEMLH
ARHAAEPEGRRRLGAA
>Mature_736_residues
MQTAGKSQSKGLGVGRHITVTGVLFSFAVIVAIVTVMVLTALERVAENANLLDDERSRETTIGALKTFEDQLAATLDDYA
AWDDAAVNVYSPDGMAWTVSNYGEMSVNSSLFDMAIVIDDGKKPIMAYRDGKPMEEPLADFFAPSLWTLFETAKADTAGT
PQAVGFVTTKRGIAAVGVALVRKKSGALDAPAGQHRYLVFARHLDNDRVTALGQTYVIGGLRLAPASFEADYFVPIVDPT
GTTLQKLVWTSRSPGDVGYAQVRPMVLQALGLVGLFFAVLLVIGWFAGRRLKADENSAREETLRDRLSGLSNRDGLGLAV
DRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQ
LAEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELD
LRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIPIAETSGLIESLGLFVLRKACETAKQWPELNV
SVNVSPGQFRNPAFADYVRYVLKQTEVEAGRITLEITEGYMIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQF
GFDRIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGYLFGKPMTADLITEMLH
ARHAAEPEGRRRLGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=36.5617433414044, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI87081921, Length=416, Percent_Identity=30.7692307692308, Blast_Score=201, Evalue=9e-53,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=27.7647058823529, Blast_Score=156, Evalue=5e-39,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=36.734693877551, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=34.7107438016529, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=33.8912133891213, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=33.6099585062241, Blast_Score=138, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=31.2236286919831, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=32.3529411764706, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=32.6530612244898, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1788849, Length=389, Percent_Identity=25.706940874036, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=34.5360824742268, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI87082096, Length=386, Percent_Identity=24.8704663212435, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1787410, Length=226, Percent_Identity=28.7610619469027, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=34.0909090909091, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=170, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=31.8918918918919, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=32.5966850828729, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=200, Percent_Identity=29.5, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789650, Length=445, Percent_Identity=20.8988764044944, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=29.7619047619048, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=29.0123456790123, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=31.4814814814815, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 80101; Mature: 80101

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTAGKSQSKGLGVGRHITVTGVLFSFAVIVAIVTVMVLTALERVAENANLLDDERSRET
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
TIGALKTFEDQLAATLDDYAAWDDAAVNVYSPDGMAWTVSNYGEMSVNSSLFDMAIVIDD
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEC
GKKPIMAYRDGKPMEEPLADFFAPSLWTLFETAKADTAGTPQAVGFVTTKRGIAAVGVAL
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
VRKKSGALDAPAGQHRYLVFARHLDNDRVTALGQTYVIGGLRLAPASFEADYFVPIVDPT
HHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEECCEEECCCCCCCCEEEEEECCC
GTTLQKLVWTSRSPGDVGYAQVRPMVLQALGLVGLFFAVLLVIGWFAGRRLKADENSARE
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHH
ETLRDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLI
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCCCCHHHHH
RGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLAEQILDFLVEPLEIGRRVV
HHHHHCHHEECCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
VVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELD
EEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHEEE
LRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIPIAETSGLIESL
EEEEEECCCEEEEEHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHH
GLFVLRKACETAKQWPELNVSVNVSPGQFRNPAFADYVRYVLKQTEVEAGRITLEITEGY
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCE
MIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQFGFDRIKIDRSLVMGVNEDKR
EECCHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHEECCCCHHH
QREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGYLFGKPMTADLITEMLH
HHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHH
ARHAAEPEGRRRLGAA
HHCCCCCCHHHHCCCC
>Mature Secondary Structure
MQTAGKSQSKGLGVGRHITVTGVLFSFAVIVAIVTVMVLTALERVAENANLLDDERSRET
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
TIGALKTFEDQLAATLDDYAAWDDAAVNVYSPDGMAWTVSNYGEMSVNSSLFDMAIVIDD
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEC
GKKPIMAYRDGKPMEEPLADFFAPSLWTLFETAKADTAGTPQAVGFVTTKRGIAAVGVAL
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
VRKKSGALDAPAGQHRYLVFARHLDNDRVTALGQTYVIGGLRLAPASFEADYFVPIVDPT
HHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEECCEEECCCCCCCCEEEEEECCC
GTTLQKLVWTSRSPGDVGYAQVRPMVLQALGLVGLFFAVLLVIGWFAGRRLKADENSARE
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHH
ETLRDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLI
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCCCCHHHHH
RGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLAEQILDFLVEPLEIGRRVV
HHHHHCHHEECCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
VVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELD
EEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHEEE
LRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIPIAETSGLIESL
EEEEEECCCEEEEEHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHH
GLFVLRKACETAKQWPELNVSVNVSPGQFRNPAFADYVRYVLKQTEVEAGRITLEITEGY
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCE
MIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQFGFDRIKIDRSLVMGVNEDKR
EECCHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHEECCCCHHH
QREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGYLFGKPMTADLITEMLH
HHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHH
ARHAAEPEGRRRLGAA
HHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]