Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 209550967

GI number: 209550967

Start: 3504512

End: 3505405

Strand: Direct

Name: yhjC [C]

Synonym: Rleg2_3391

Alternate gene names: 209550967

Gene position: 3504512-3505405 (Clockwise)

Preceding gene: 209550962

Following gene: 209550968

Centisome position: 77.23

GC content: 60.29

Gene sequence:

>894_bases
ATGGATACCTTGACCCGCATACGCGCCTTCATCGATGTCGTCGAGGCCGAAGGCTTTTCCGCCGCCGCCAGGCGCACCGG
CCGCTCCAAGGCGCTGCTCTCCAAATATGTGCGCGAATTGGAAGATGAACTCGGCGCCCTGCTGCTCAACCGCACCACCC
GGCAGTTCTCCATGACCGAGGCCGGCCACACCTATTACCGCAGCGCCTCGGATATCCTCAAGGAGATCGACAACCTTGCC
GACCTCGTGCGCGAAAACAATGCGCAGCTGAAGGGACGGCTGCGTATATCCGTGCCCCGCACTTTCGTCGATGCCGATGT
CGGCCAGTCGCTGATCGATTTCTCCAGGGAGAACCCGGATCTTTCGCTGGAGATCGCCGCCGACGACCGGTTTGTCGATC
TGATCGAGGAAGGCTTCGACGTGGCGATCCGCATCAGCAAGCTCGAAGATTCCGGCATGATCGCCCGCAAAATCTCCGAT
TTTCGCGTCCATCTCTGCGTCACCCCCGATTTTCTCGAGCGCCATCCCGATCTTGCCCATCCGAGCGACATTTCCAACGT
CCCCTTCATCGTCGACACCAATTCGCGCACCCAGGCGAGCATCCGCTTCCACAATCCCGACAACACCTCATTCAGCGTCG
CCGTCTCCGGCCCGATGGAGGTCAACAGTCCGCATGCGACTTTGCGCGCGGCGCTTGCCGGCATCGGCATCGCCCTCATC
CCTGATTTTATCGCCCGCAAGCCGATCGAGAGCGGCGAGCTGGTGACGCTGTTCAACGATTATCTCCCGACCGACCGCGG
CATCTATGCCGTCTATCCGCACCGCCGCTACCTGCCGGCCAAGGTGAGGATCTTCGTCGATTATCTCAACAACTGGTTCA
AGAAACATCCGTAG

Upstream 100 bases:

>100_bases
GCCTTCATAATCAAGCGTTTTTTTGATCTCGGGGTCAAAAAAATAATTGAACGGGAGGAGCCGATTTGTTCAATATTCCG
AAACAGTTTAAGGGATGGCC

Downstream 100 bases:

>100_bases
CGCCGCTCTTGCGGCTGCGACATCGCGCCCCGCGCCAACTCGCGGCTCTTTGAATCCAGTGCGGAATCCGGTCCCAATTC
CGTCCCAATTTCTGGCAAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTYYRSASDILKEIDNLA
DLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPDLSLEIAADDRFVDLIEEGFDVAIRISKLEDSGMIARKISD
FRVHLCVTPDFLERHPDLAHPSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGIALI
PDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYLNNWFKKHP

Sequences:

>Translated_297_residues
MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTYYRSASDILKEIDNLA
DLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPDLSLEIAADDRFVDLIEEGFDVAIRISKLEDSGMIARKISD
FRVHLCVTPDFLERHPDLAHPSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGIALI
PDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYLNNWFKKHP
>Mature_297_residues
MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTYYRSASDILKEIDNLA
DLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPDLSLEIAADDRFVDLIEEGFDVAIRISKLEDSGMIARKISD
FRVHLCVTPDFLERHPDLAHPSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGIALI
PDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYLNNWFKKHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=31.6498316498317, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.7167235494881, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=32.5423728813559, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.2816901408451, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=30.5369127516779, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=28.3737024221453, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=25.0847457627119, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=26.0416666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790011, Length=284, Percent_Identity=23.943661971831, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=21.6494845360825, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787601, Length=136, Percent_Identity=30.1470588235294, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367136, Length=294, Percent_Identity=26.1904761904762, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786448, Length=299, Percent_Identity=23.4113712374582, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=147, Percent_Identity=31.9727891156463, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=29.1666666666667, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33460; Mature: 33460

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE
CCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHH
AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
LSLEIAADDRFVDLIEEGFDVAIRISKLEDSGMIARKISDFRVHLCVTPDFLERHPDLAH
EEEEEECCCHHHHHHHCCCCEEEEEEECCCCCHHHEECCCEEEEEEECHHHHHCCCCCCC
PSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGIALI
CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCHHHHH
PDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYLNNWFKKHP
HHHHHHCCCCCCCEEEEEHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE
CCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHH
AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
LSLEIAADDRFVDLIEEGFDVAIRISKLEDSGMIARKISDFRVHLCVTPDFLERHPDLAH
EEEEEECCCHHHHHHHCCCCEEEEEEECCCCCHHHEECCCEEEEEEECHHHHHCCCCCCC
PSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGIALI
CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCHHHHH
PDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYLNNWFKKHP
HHHHHHCCCCCCCEEEEEHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]