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The map label for this gene is yciR [C]

Identifier: 209550947

GI number: 209550947

Start: 3481865

End: 3484168

Strand: Reverse

Name: yciR [C]

Synonym: Rleg2_3371

Alternate gene names: 209550947

Gene position: 3484168-3481865 (Counterclockwise)

Preceding gene: 209550950

Following gene: 209550946

Centisome position: 76.78

GC content: 61.59

Gene sequence:

>2304_bases
ATGAAGCCAGATAACCCGAACAGGGTCCCTTTAGATGTGTATCTGTCGTTTGTGAGTTCCCTTTCCGGGAACCGCATGAC
GCTTTTTGTTGGCGTGATCGTGCATATCGCGACGTGCCTTGCCGTGGCCGCCAAAACGCAATCCGCCGTCTATATTCCGC
TGTCGATTGCCTTTCTTCTGGTTTTCAGCATTCGCATGGCCATCTTCCGGCGGTTCGATCAGGTCGACAAGGAGAGCTTG
TCGCATGCCGGAATCGAGCGTTGGGAGCGGATTCTGGTTGCCAGTGGGGCCTGCACCACCGCCCTGCTTGGCTTTGCCAG
CGGCTACGCCATCTTCGTCGTCCACGATTCCTTTGCCGAACTTGCCTGCATTTCCGTCACCATGGCGACCATGGTTTCCG
TCGTCGGCCGCAACTACGGCTCGCGCTTCGCAGTCGATCTCCAGACGTTCTTCTGCTGCCTGCCGATGATCGTCTGCAGC
CTGCTGGCGATGGATTTATATCGCGGCCTGCTGTCGATCTTCCTCATCCCCTTCTGGCTGACGACGCGAGCGATGGCGAA
CGGCGTGCGCGAGTTCCTTTATGAGAATGTCATCGCGCGCCGGGAAATCACCATCATAGCCGACCGTTTCGATACGGCGC
TGAACAACATGCCGCATGGCCTGGTCATGGTCGATGCCGAAAACCGGATCCAGGTCGTCAACCGCAAGGCCTGCGAGCTT
CTGAAGATCGGCGCGCCGGAGCGGCTGAAGGACCGCGACCTCGGCGCCGTCCTGCGTTACGGCGCTCGCTACAGCTTCAT
GGACGCCTCGCAGCCAGAGCTCATCCTGCGCCAGCTCACCCAGGTCGCCGAAGGCAACCTGTCGCGCACGCTCGTTCATT
TTCCCGAGGGCCTGTCTCTGGAATTCTCCGCCAGCCGAAGGGCCGATGGCGGCGCCGTACTGATCTTCGAGGACGTGTCG
AGCCGTGTGAAGGCGGAGCAGAAGATCATGCACATGGTCCGCTTCGATGCGCTGACCGGTCTGCCGAACCGGGAATATTT
CGGGCAGCTGGTGCAGGACTATCTCGCCAAACATCAGAGGAAGTCCGGGCCGCTCGGTTTCATGGTTCTCGATATCGACG
AGTTCAAACATGTCAACGACATGCGCGGCCATGTCACCGGCGACCATCTGCTCTGCGCTATCGCCGCCCGCATCAAGCAG
GCCTCCGGCAACGCCATTCTCGGCCGGCTGATGGGCGACCAGTTCATCCTGTTCTTCCCGCATGCGAAGGAGCCGGCCTC
GCTCGACATCGAGATCCGCCGCGTGCACGCGGCGATCCAGGGTCACTACGAGGTCGATGAGCTGACCTTCCTCGTTTCGC
TGAGCGCCGGCTACGCCATCCTGGAAAGCACCGCCTTCGCGATGGACGAGTGGAGCGTCAAGGCGGATCTTGCCCTGTTC
GAAAGCAAGTCGCGCTTCAAGGGCGGCATATCAGGCTTCGAACGGGAGATGGACGGCCGCTACATCGAGCAGCAGAAGCT
GAAGGCGGATCTGCGCGAGGCGGTTTCGGCCCAGGCGCTGCATCTGGTCTTCCAGCCGATGTTCCGGGCCGATGGTTCCC
GCATCGAATGCGCCGAGGCGTTGGCGCGCTGGGTGCATCCGGAGAAGGGCTCGATCCCGCCCGATGTCTTCATCCGGCTC
GCCGAAGATATGGGCATCATCTCCGACATCACCCGCTTCGTCCTGTTCAAGGCCTGCAGCGAATGCATGAACTGGCCGGA
CCATATCGCCGTCTCGGTCAACCTCTCGGCGCGGGACCTCAGGGATGCCGACATCCTTAAGGTGGTCGCCGACGCGCTTG
CCCATTCCGGCCTCGACGCGGCGCGGCTGCATCTCGAAGTCACAGAAAGCTGCCTGATCGACGAGCCGGCAGCCGTGCGC
GCCATCCTGGCAGAACTCAGGGCCCGCGGCATCACCATCGCCATCGACGACTTCGGGACCGGCTTTTCCAGTCTCAGCTA
TCTCGACACGCTGCCGCTTGATATCGTCAAGATCGACCGTTCCTTTGTCCGCAATATCGTCGAGGATACCCGCCGCCTCA
AGCTGTTGCGCGGCACGGTCCATCTCGCCCGCGAACTGGGGCTGAAGATCGTCATCGAGGGTGTCGAGACCGAAGAGCAG
CTCGCCCTGCTCAACAAACACCGCAGTACCGATCTGGTGCAGGGCTATGTTTTCTCTCAGCCGGTGCCCTCCCAGAATAT
CCCGCTCTTGCAGCAGGGCATCGGCCGCCGCCCCGTCCAGCGCCGACGCAACAAGGTCGCCTGA

Upstream 100 bases:

>100_bases
TCATCCTCTGGTTTTAGAAAATTTGACCAAATGTTTGATTCCATTGAAATCAATTTTTAAAAGGTTGGGCTTAGAATTCC
CGCGCACAGGGAAAGTGTGG

Downstream 100 bases:

>100_bases
GCGCTCCGCTACGGCCGCTTTTCCGCTGACAATCCTCCACGCCGTTAACCTTAATACTTTATAAACGGCCCGAATTATCG
GATTTCCTTGCCTAAATCTC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 767; Mature: 767

Protein sequence:

>767_residues
MKPDNPNRVPLDVYLSFVSSLSGNRMTLFVGVIVHIATCLAVAAKTQSAVYIPLSIAFLLVFSIRMAIFRRFDQVDKESL
SHAGIERWERILVASGACTTALLGFASGYAIFVVHDSFAELACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCS
LLAMDLYRGLLSIFLIPFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRKACEL
LKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTLVHFPEGLSLEFSASRRADGGAVLIFEDVS
SRVKAEQKIMHMVRFDALTGLPNREYFGQLVQDYLAKHQRKSGPLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQ
ASGNAILGRLMGDQFILFFPHAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAFAMDEWSVKADLALF
ESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEALARWVHPEKGSIPPDVFIRL
AEDMGIISDITRFVLFKACSECMNWPDHIAVSVNLSARDLRDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVR
AILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVHLARELGLKIVIEGVETEEQ
LALLNKHRSTDLVQGYVFSQPVPSQNIPLLQQGIGRRPVQRRRNKVA

Sequences:

>Translated_767_residues
MKPDNPNRVPLDVYLSFVSSLSGNRMTLFVGVIVHIATCLAVAAKTQSAVYIPLSIAFLLVFSIRMAIFRRFDQVDKESL
SHAGIERWERILVASGACTTALLGFASGYAIFVVHDSFAELACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCS
LLAMDLYRGLLSIFLIPFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRKACEL
LKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTLVHFPEGLSLEFSASRRADGGAVLIFEDVS
SRVKAEQKIMHMVRFDALTGLPNREYFGQLVQDYLAKHQRKSGPLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQ
ASGNAILGRLMGDQFILFFPHAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAFAMDEWSVKADLALF
ESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEALARWVHPEKGSIPPDVFIRL
AEDMGIISDITRFVLFKACSECMNWPDHIAVSVNLSARDLRDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVR
AILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVHLARELGLKIVIEGVETEEQ
LALLNKHRSTDLVQGYVFSQPVPSQNIPLLQQGIGRRPVQRRRNKVA
>Mature_767_residues
MKPDNPNRVPLDVYLSFVSSLSGNRMTLFVGVIVHIATCLAVAAKTQSAVYIPLSIAFLLVFSIRMAIFRRFDQVDKESL
SHAGIERWERILVASGACTTALLGFASGYAIFVVHDSFAELACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCS
LLAMDLYRGLLSIFLIPFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRKACEL
LKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTLVHFPEGLSLEFSASRRADGGAVLIFEDVS
SRVKAEQKIMHMVRFDALTGLPNREYFGQLVQDYLAKHQRKSGPLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQ
ASGNAILGRLMGDQFILFFPHAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAFAMDEWSVKADLALF
ESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEALARWVHPEKGSIPPDVFIRL
AEDMGIISDITRFVLFKACSECMNWPDHIAVSVNLSARDLRDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVR
AILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVHLARELGLKIVIEGVETEEQ
LALLNKHRSTDLVQGYVFSQPVPSQNIPLLQQGIGRRPVQRRRNKVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=31.4087759815243, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=33.1797235023041, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI1786507, Length=225, Percent_Identity=38.6666666666667, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI226510982, Length=428, Percent_Identity=25.9345794392523, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=34.4398340248963, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=32.3308270676692, Blast_Score=130, Evalue=5e-31,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=33.739837398374, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=34.9206349206349, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=32.3651452282158, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=31.404958677686, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=32.6359832635983, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=417, Percent_Identity=24.9400479616307, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082096, Length=258, Percent_Identity=28.6821705426357, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=28.4916201117318, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=25.2941176470588, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 85470; Mature: 85470

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDNPNRVPLDVYLSFVSSLSGNRMTLFVGVIVHIATCLAVAAKTQSAVYIPLSIAFLL
CCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
VFSIRMAIFRRFDQVDKESLSHAGIERWERILVASGACTTALLGFASGYAIFVVHDSFAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCHHH
LACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCSLLAMDLYRGLLSIFLIPFWL
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRKACEL
HHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH
LKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTLVHFPEGLSL
HHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCE
EFSASRRADGGAVLIFEDVSSRVKAEQKIMHMVRFDALTGLPNREYFGQLVQDYLAKHQR
EECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
KSGPLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQASGNAILGRLMGDQFILFFP
CCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEC
HAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAFAMDEWSVKADLALF
CCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHH
ESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEA
HCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
LARWVHPEKGSIPPDVFIRLAEDMGIISDITRFVLFKACSECMNWPDHIAVSVNLSARDL
HHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHC
RDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVRAILAELRARGITIAIDDFGT
CHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCC
GFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVHLARELGLKIVIEGVETEEQ
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LALLNKHRSTDLVQGYVFSQPVPSQNIPLLQQGIGRRPVQRRRNKVA
HHHHHHCCCCHHHHCHHCCCCCCCCCCCHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MKPDNPNRVPLDVYLSFVSSLSGNRMTLFVGVIVHIATCLAVAAKTQSAVYIPLSIAFLL
CCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
VFSIRMAIFRRFDQVDKESLSHAGIERWERILVASGACTTALLGFASGYAIFVVHDSFAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCHHH
LACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCSLLAMDLYRGLLSIFLIPFWL
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRKACEL
HHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH
LKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTLVHFPEGLSL
HHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCE
EFSASRRADGGAVLIFEDVSSRVKAEQKIMHMVRFDALTGLPNREYFGQLVQDYLAKHQR
EECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
KSGPLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQASGNAILGRLMGDQFILFFP
CCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEC
HAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAFAMDEWSVKADLALF
CCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHH
ESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEA
HCHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
LARWVHPEKGSIPPDVFIRLAEDMGIISDITRFVLFKACSECMNWPDHIAVSVNLSARDL
HHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHC
RDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVRAILAELRARGITIAIDDFGT
CHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCC
GFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVHLARELGLKIVIEGVETEEQ
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LALLNKHRSTDLVQGYVFSQPVPSQNIPLLQQGIGRRPVQRRRNKVA
HHHHHHCCCCHHHHCHHCCCCCCCCCCCHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]