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The map label for this gene is 209550829

Identifier: 209550829

GI number: 209550829

Start: 3341741

End: 3342991

Strand: Direct

Name: 209550829

Synonym: Rleg2_3253

Alternate gene names: NA

Gene position: 3341741-3342991 (Clockwise)

Preceding gene: 209550828

Following gene: 209550843

Centisome position: 73.64

GC content: 68.19

Gene sequence:

>1251_bases
ATGCCGCCCGATGCCGGACGCGCCGCCGAACAGGTGGCGCGTCAGTCCTACGGCAAACTGATCGCCTTTCTCGCCGCCCG
CTCGCGTGACGTGCCGGCGGCGGAAGACGCATTGTCGGAAGCGCTGGCTTCGGCCCTTCGCGTCTGGCCGGAGCGCGGCG
TTCCCGACAAGCCGGAAGCCTGGCTGCTGGTGGCCGCACGCCGCAACCTGATGCAGGCCGCCCGCCACCGCACCGTCGCG
GCCAATGCGCAGACGACGATAACCGTCGCCTTCGAGGAGGCGGAGGAACGCATGAACGAGGCCGGCAAAGCCGTCTTTCC
CGATGAGCGGCTGAAGCTGCTCTTCGCCTGCACCCATCCCGCCATCGACAGCTCCGTGCATACCGCGCTGATGCTGCAGA
CTGTTCTCGGCATCGAGGCGAAAACCATCGCACGGGCCTTCGTCGTTTCGCCGGAGGCGATGAGCCAGCGGCTGGTGCGG
GCCAAGGTGAAGATTCGCGATACCGGCATTCCCTTCGCCGTTCCCCCTCGTCCCGCCCTGCCGGAGCGGCTCGCTGCCGT
GCTTTCGGCGATCTACGCCGCCTACGGCCTCGGATGGGACGGTCTCGACGGCGAGGAAGAGCGCCATTCGCTTGCCGGCG
AAGCGATCTGGCTCGGCCGCGCGCTTCTGGCGGTGCTGCCGGACGAACCGGAAGCGATCGGCCTGCTGTCGCTGATGCTT
CACTGCGAGGCCCGCCGCAGCGCCCGGCGCGATTGCAATGGCCGATATGTGCCGCTGGACGAGCAGGATACGGCGGCCTG
GAACGCAATCATGATCGCCGAGGCGGATGCGCTGCTGCGCAAGGCCGGAGGTTTTAACCGTTTCGGTCCCTTTCAGTGCC
AGGCTGCGATCCAATCCGTGCACGCGGCGCGCCGGCTTTCGGGAACGACCGATTGGCCGGCGCTGACAACGCTCTACGCG
GCGCTGGTCACGATGAAACCCACGCTCGGCGCACACGTCGCCGAAGCAGCGGTGATCGGCAGGGCCCTCAGTGCCGCCGC
TGGCCTGGCGCGGCTCGACAGGCTCGATCCGCGCGATACTGCGGCCTATCAGCCCTATTGGGCCGTGCGTGCCTTTCTTC
TCGCACGCGCCGGCGACGATGCCGCAGCAGTCGACGCCTACATGACGGCGATCGGCCTCAGCGACAGCCCCGCCGTGGGT
GATTTTCTCGCTGACCGGCTGAAGGAGGCGCGGCAAGGGACGCTGGGCTGA

Upstream 100 bases:

>100_bases
GAAGTCCCCGACATGGACACCGCGCTCGAATGGGCAACACGCGTTCCGATCTCCGACAGGGGTTCGGTCGAGGTGCGTCC
GCGCCTGCAGATGTGAGGTG

Downstream 100 bases:

>100_bases
TTATTTCCTGGCTGATTATTTCTCGGTCAGCTTCAGCTCGATGCGGCGATTGGTGGCACGTGCATCCGGCGTTTCGCCGG
GGGCAATCGGCTGGAACTCG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MPPDAGRAAEQVARQSYGKLIAFLAARSRDVPAAEDALSEALASALRVWPERGVPDKPEAWLLVAARRNLMQAARHRTVA
ANAQTTITVAFEEAEERMNEAGKAVFPDERLKLLFACTHPAIDSSVHTALMLQTVLGIEAKTIARAFVVSPEAMSQRLVR
AKVKIRDTGIPFAVPPRPALPERLAAVLSAIYAAYGLGWDGLDGEEERHSLAGEAIWLGRALLAVLPDEPEAIGLLSLML
HCEARRSARRDCNGRYVPLDEQDTAAWNAIMIAEADALLRKAGGFNRFGPFQCQAAIQSVHAARRLSGTTDWPALTTLYA
ALVTMKPTLGAHVAEAAVIGRALSAAAGLARLDRLDPRDTAAYQPYWAVRAFLLARAGDDAAAVDAYMTAIGLSDSPAVG
DFLADRLKEARQGTLG

Sequences:

>Translated_416_residues
MPPDAGRAAEQVARQSYGKLIAFLAARSRDVPAAEDALSEALASALRVWPERGVPDKPEAWLLVAARRNLMQAARHRTVA
ANAQTTITVAFEEAEERMNEAGKAVFPDERLKLLFACTHPAIDSSVHTALMLQTVLGIEAKTIARAFVVSPEAMSQRLVR
AKVKIRDTGIPFAVPPRPALPERLAAVLSAIYAAYGLGWDGLDGEEERHSLAGEAIWLGRALLAVLPDEPEAIGLLSLML
HCEARRSARRDCNGRYVPLDEQDTAAWNAIMIAEADALLRKAGGFNRFGPFQCQAAIQSVHAARRLSGTTDWPALTTLYA
ALVTMKPTLGAHVAEAAVIGRALSAAAGLARLDRLDPRDTAAYQPYWAVRAFLLARAGDDAAAVDAYMTAIGLSDSPAVG
DFLADRLKEARQGTLG
>Mature_415_residues
PPDAGRAAEQVARQSYGKLIAFLAARSRDVPAAEDALSEALASALRVWPERGVPDKPEAWLLVAARRNLMQAARHRTVAA
NAQTTITVAFEEAEERMNEAGKAVFPDERLKLLFACTHPAIDSSVHTALMLQTVLGIEAKTIARAFVVSPEAMSQRLVRA
KVKIRDTGIPFAVPPRPALPERLAAVLSAIYAAYGLGWDGLDGEEERHSLAGEAIWLGRALLAVLPDEPEAIGLLSLMLH
CEARRSARRDCNGRYVPLDEQDTAAWNAIMIAEADALLRKAGGFNRFGPFQCQAAIQSVHAARRLSGTTDWPALTTLYAA
LVTMKPTLGAHVAEAAVIGRALSAAAGLARLDRLDPRDTAAYQPYWAVRAFLLARAGDDAAAVDAYMTAIGLSDSPAVGD
FLADRLKEARQGTLG

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 44656; Mature: 44524

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPDAGRAAEQVARQSYGKLIAFLAARSRDVPAAEDALSEALASALRVWPERGVPDKPEA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
WLLVAARRNLMQAARHRTVAANAQTTITVAFEEAEERMNEAGKAVFPDERLKLLFACTHP
HEEHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHEEEEEECCC
AIDSSVHTALMLQTVLGIEAKTIARAFVVSPEAMSQRLVRAKVKIRDTGIPFAVPPRPAL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
PERLAAVLSAIYAAYGLGWDGLDGEEERHSLAGEAIWLGRALLAVLPDEPEAIGLLSLML
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HCEARRSARRDCNGRYVPLDEQDTAAWNAIMIAEADALLRKAGGFNRFGPFQCQAAIQSV
HHHHHHHHHHCCCCCCCCCCCCCCHHHCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHH
HAARRLSGTTDWPALTTLYAALVTMKPTLGAHVAEAAVIGRALSAAAGLARLDRLDPRDT
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAYQPYWAVRAFLLARAGDDAAAVDAYMTAIGLSDSPAVGDFLADRLKEARQGTLG
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PPDAGRAAEQVARQSYGKLIAFLAARSRDVPAAEDALSEALASALRVWPERGVPDKPEA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
WLLVAARRNLMQAARHRTVAANAQTTITVAFEEAEERMNEAGKAVFPDERLKLLFACTHP
HEEHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHEEEEEECCC
AIDSSVHTALMLQTVLGIEAKTIARAFVVSPEAMSQRLVRAKVKIRDTGIPFAVPPRPAL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
PERLAAVLSAIYAAYGLGWDGLDGEEERHSLAGEAIWLGRALLAVLPDEPEAIGLLSLML
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
HCEARRSARRDCNGRYVPLDEQDTAAWNAIMIAEADALLRKAGGFNRFGPFQCQAAIQSV
HHHHHHHHHHCCCCCCCCCCCCCCHHHCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHH
HAARRLSGTTDWPALTTLYAALVTMKPTLGAHVAEAAVIGRALSAAAGLARLDRLDPRDT
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAYQPYWAVRAFLLARAGDDAAAVDAYMTAIGLSDSPAVGDFLADRLKEARQGTLG
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]