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The map label for this gene is slyA [H]

Identifier: 209550681

GI number: 209550681

Start: 3171924

End: 3172388

Strand: Reverse

Name: slyA [H]

Synonym: Rleg2_3105

Alternate gene names: 209550681

Gene position: 3172388-3171924 (Counterclockwise)

Preceding gene: 209550685

Following gene: 209550680

Centisome position: 69.91

GC content: 63.01

Gene sequence:

>465_bases
ATGAGCGCTACTCCGACCCTCGGCTTCCTTCTCCACGACGTCGCACGGCTGCTGCGCAAGCGGTTCGAGCAACGCGCGAA
ATGCCTTGGGCTGACCCGGTCGCAGTGGCAGACGCTGGCCTATCTCTCGAACAATGAGGGCATCCATCAAGGCGGCCTTG
CCGAAATCCTCGAGGTCGAGCCGATCACACTGGTGCGCATCCTCGACAAGCTCGCCGAACGGGGGCTGATCGAGCGCCGC
CAGCACCCGACCGATCGGCGGATCTGGCTGCTTTACATGCGCGACGAGGCGCACCCGCTGCTCGCCGAAATGCGCGAGCT
TGGTGACACCACCCGCGCGGAAGCGTTGCAAAGCATTACGGCCGAGCAGCGCGAGCAGCTTTTCCACATCCTATCCGTAA
TGAAGACGAACCTGGTTCAGGCATGCCGGAGCCCGGTCGACGAGAATGAGACGAACGATGGCTGA

Upstream 100 bases:

>100_bases
CACCTGCGAAATCCTGCGACCGTGCTCTTGCGCGCTCGGCATGCTCAATATATCTACTGATATTATAAGTATGCTTATAA
ATTAATGATCGCAGGTGTTC

Downstream 100 bases:

>100_bases
TCAATCCCCCCTCCGCGTCGTTGCCGACGCCAATGCCAAGACACCTGTCGAAGAAGACCAAGCCAAACAGCAGGAAACGG
TAGCCGAAGCGCCTCCATCC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSATPTLGFLLHDVARLLRKRFEQRAKCLGLTRSQWQTLAYLSNNEGIHQGGLAEILEVEPITLVRILDKLAERGLIERR
QHPTDRRIWLLYMRDEAHPLLAEMRELGDTTRAEALQSITAEQREQLFHILSVMKTNLVQACRSPVDENETNDG

Sequences:

>Translated_154_residues
MSATPTLGFLLHDVARLLRKRFEQRAKCLGLTRSQWQTLAYLSNNEGIHQGGLAEILEVEPITLVRILDKLAERGLIERR
QHPTDRRIWLLYMRDEAHPLLAEMRELGDTTRAEALQSITAEQREQLFHILSVMKTNLVQACRSPVDENETNDG
>Mature_153_residues
SATPTLGFLLHDVARLLRKRFEQRAKCLGLTRSQWQTLAYLSNNEGIHQGGLAEILEVEPITLVRILDKLAERGLIERRQ
HPTDRRIWLLYMRDEAHPLLAEMRELGDTTRAEALQSITAEQREQLFHILSVMKTNLVQACRSPVDENETNDG

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=135, Percent_Identity=35.5555555555556, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17699; Mature: 17567

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPTLGFLLHDVARLLRKRFEQRAKCLGLTRSQWQTLAYLSNNEGIHQGGLAEILEVE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCC
PITLVRILDKLAERGLIERRQHPTDRRIWLLYMRDEAHPLLAEMRELGDTTRAEALQSIT
HHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHH
AEQREQLFHILSVMKTNLVQACRSPVDENETNDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SATPTLGFLLHDVARLLRKRFEQRAKCLGLTRSQWQTLAYLSNNEGIHQGGLAEILEVE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCC
PITLVRILDKLAERGLIERRQHPTDRRIWLLYMRDEAHPLLAEMRELGDTTRAEALQSIT
HHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHH
AEQREQLFHILSVMKTNLVQACRSPVDENETNDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA