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The map label for this gene is yciR [C]

Identifier: 209550668

GI number: 209550668

Start: 3154937

End: 3156742

Strand: Reverse

Name: yciR [C]

Synonym: Rleg2_3092

Alternate gene names: 209550668

Gene position: 3156742-3154937 (Counterclockwise)

Preceding gene: 209550669

Following gene: 209550667

Centisome position: 69.56

GC content: 61.46

Gene sequence:

>1806_bases
ATGGAAGCTTCTAAGGCTGAGACCGCGTTGCCAGAAAATAGACCCACACGATCCGAACAAGAGTTTCAGGATCTTCTGCG
CCGGCTCGAACTCGCTCTCGATGCATCCCGGATCGGTGTCTGGGAGCACAGCATCGCAACGAGCGGGATCTTGTGGGATG
CGCAGATGCACCGTCTCTACGAAACCGGCGAGACATGCCGGGAAGTGCCGGCATGGTTATGGTCGAATGCGATCCATCCC
GACGACCGCGAGCAAGCCGAATACGACTTCGACCAGGCGATCGCCACCCGGGGCGCCTATAATTCGCAATTTCGGATCGT
GCTGCCGAGCGGCGAAATCCGCCATCTGAGGTCACGCGCACATTTCTACGTGGATGCGGAGGGGCTGCCCTCCTTCATCG
GCGCCGAATGGGATGTCACCGCCGACGTCCTGCTTAACGCTGAACTCGCCGGCCAGAAGATGGTGGCCGAGGCGAGAGCC
CTGGCGCTCGAGGAAAGCAATGCGCGCATCGAGCATGTCGCCGATCACGACTATCTCACCGGCCTGCCGAACCGGCGTCT
TCTCGACAAGCGGCTCGCCGAGCTGCCGGCCGACAGGAGCATCACCACGCTTGGCGTCCTGCATCTCGATCTCGACCAGT
TCAAGCAGATCAATGACAGTCACGGTCATGCCGCAGGCGACGCGGTTCTGAGGGCCGCAGCCCTTCGCATCACTGCCGCC
ATTCCCGCAAATGGCATGGTCGCCCGCGTCGGCGGCGACGAATTCGTCATCGTGCTGGTCAATTTCAGCGATCTCGCTGA
ATTGAAACTCATTACCGACGACCTTCAGCGCCGGCTGCGGAAGAAGATCCGCTTCGGTCAGGAGATGCTGCAATCCGGCG
CCTCGATCGGCGTTTCCTGGAGCGGCGATCGGCGGGCGCGCAGCCTGCTTGCCGAATCCGATCTGGCGCTCTACCAGGCC
AAGAAGCTCGGGCGCAACCGCGTCGAATTCTTCACGCGGCAACTGCGTCGCCTCGCCGAAGAGCTGAAGCTCGGGCTGGA
GCGCGGCGAAATCGTTCCCTATTATCAGGTGCAGCTCGATGCCCGGACGCGGGAGGTGATCGGCTTCGAGGCCCTGGCGC
GCTGGAAACATCCGGAGAAGGGCGTGCTCGCCCCGGGAATATTCCTGAAGATCGCCGACGAGCATGGGCTTGCGGCGGAG
ATCGATGCGGCGATCCTCAAAAACGTTCTTGAAGACCGGCTGTTTTGGCTGTTGCAGGGATTTGCGGTTCCGCGCATTGC
GGTCAATATCTCGGCGTCGCGGCTTGCCGATCCGACATTGCTCGGCAAGCTGAGGAAACTCGACATTCCGCCAGGCGTGA
TCGTGTTCGAACTGGTCGAGACTATTTTTCTCGACGACAGCGACGAAAAACTGCTCGACCATATTGGCGATATCAAACAA
ATGGGCATCGACATCGAGATCGATGATTTCGGATCCGGCCATGCCTCGCTCATCGGTCTCGTCAAGCTGCGGCCGAAGCG
GCTGAAGATCGACCGGCAGCTCATTGCCGAAGTCGTCAGTTCCGCCGAGCAGCGGCGCGTGGTGGGTTCGATCGTGGAAA
TCGCCAAGGCGCTCGACGTCGAGGTTATCGCCGAGGGCATCGAGACCGAGGCGCATGCCGTCGTGCTGGCGCAGCTCGGC
TGCGATGGCCTGCAGGGTTACGCGTTTGGTTATCCCGCACCGGCGGCCGAGACGGCTCGTCTTTTCTCGCCCATGGCGAG
CGGGATCGAAAAGCAGAAGACGGCGATCGGCGGAACGGTCCGGTGA

Upstream 100 bases:

>100_bases
GATCCAAAAGGGGAAAGTCGTAACGGACAGTTCACCTAGTGACTAGTTCGATCATCGGAACAAGGCTTCATTAATGCCGG
CCTGAGACCATATTGCAATT

Downstream 100 bases:

>100_bases
TCCGTCGGTGGGGACCACTGGCGGGCTTTCGCGGTCGCGGAGAGATAATTTGCGCAAGTAATTTTCTTGAGGTTGCATCG
GCATTGTTTCATGCTAATGC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MEASKAETALPENRPTRSEQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLYETGETCREVPAWLWSNAIHP
DDREQAEYDFDQAIATRGAYNSQFRIVLPSGEIRHLRSRAHFYVDAEGLPSFIGAEWDVTADVLLNAELAGQKMVAEARA
LALEESNARIEHVADHDYLTGLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAA
IPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSWSGDRRARSLLAESDLALYQA
KKLGRNRVEFFTRQLRRLAEELKLGLERGEIVPYYQVQLDARTREVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAE
IDAAILKNVLEDRLFWLLQGFAVPRIAVNISASRLADPTLLGKLRKLDIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQ
MGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDVEVIAEGIETEAHAVVLAQLG
CDGLQGYAFGYPAPAAETARLFSPMASGIEKQKTAIGGTVR

Sequences:

>Translated_601_residues
MEASKAETALPENRPTRSEQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLYETGETCREVPAWLWSNAIHP
DDREQAEYDFDQAIATRGAYNSQFRIVLPSGEIRHLRSRAHFYVDAEGLPSFIGAEWDVTADVLLNAELAGQKMVAEARA
LALEESNARIEHVADHDYLTGLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAA
IPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSWSGDRRARSLLAESDLALYQA
KKLGRNRVEFFTRQLRRLAEELKLGLERGEIVPYYQVQLDARTREVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAE
IDAAILKNVLEDRLFWLLQGFAVPRIAVNISASRLADPTLLGKLRKLDIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQ
MGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDVEVIAEGIETEAHAVVLAQLG
CDGLQGYAFGYPAPAAETARLFSPMASGIEKQKTAIGGTVR
>Mature_601_residues
MEASKAETALPENRPTRSEQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLYETGETCREVPAWLWSNAIHP
DDREQAEYDFDQAIATRGAYNSQFRIVLPSGEIRHLRSRAHFYVDAEGLPSFIGAEWDVTADVLLNAELAGQKMVAEARA
LALEESNARIEHVADHDYLTGLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAA
IPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSWSGDRRARSLLAESDLALYQA
KKLGRNRVEFFTRQLRRLAEELKLGLERGEIVPYYQVQLDARTREVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAE
IDAAILKNVLEDRLFWLLQGFAVPRIAVNISASRLADPTLLGKLRKLDIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQ
MGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDVEVIAEGIETEAHAVVLAQLG
CDGLQGYAFGYPAPAAETARLFSPMASGIEKQKTAIGGTVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=32.0843091334895, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=28.0742459396752, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=30.7053941908714, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=30.672268907563, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=29.1338582677165, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=30.0813008130081, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87082096, Length=438, Percent_Identity=26.2557077625571, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=23.4299516908213, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI87081743, Length=258, Percent_Identity=30.6201550387597, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=27.906976744186, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788849, Length=444, Percent_Identity=24.0990990990991, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=28.1632653061224, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=34.8571428571429, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.7560975609756, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=32.4742268041237, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=200, Percent_Identity=34.5, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=31.1764705882353, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=30.2469135802469, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=34.1317365269461, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=212, Percent_Identity=24.5283018867925, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=29.5081967213115, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=33.9393939393939, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=31.6770186335404, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=33.1168831168831, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 66582; Mature: 66582

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEASKAETALPENRPTRSEQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEHHHHHHHH
ETGETCREVPAWLWSNAIHPDDREQAEYDFDQAIATRGAYNSQFRIVLPSGEIRHLRSRA
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
HFYVDAEGLPSFIGAEWDVTADVLLNAELAGQKMVAEARALALEESNARIEHVADHDYLT
CEEEECCCCCHHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHC
GLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAA
CCCCHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHEEEE
IPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSW
CCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
SGDRRARSLLAESDLALYQAKKLGRNRVEFFTRQLRRLAEELKLGLERGEIVPYYQVQLD
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
ARTREVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAEIDAAILKNVLEDRLFWLLQG
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
FAVPRIAVNISASRLADPTLLGKLRKLDIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQ
CCCCEEEEEECHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDV
CCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIAEGIETEAHAVVLAQLGCDGLQGYAFGYPAPAAETARLFSPMASGIEKQKTAIGGTV
HHHHHCCCCHHHEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
R
C
>Mature Secondary Structure
MEASKAETALPENRPTRSEQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEHHHHHHHH
ETGETCREVPAWLWSNAIHPDDREQAEYDFDQAIATRGAYNSQFRIVLPSGEIRHLRSRA
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
HFYVDAEGLPSFIGAEWDVTADVLLNAELAGQKMVAEARALALEESNARIEHVADHDYLT
CEEEECCCCCHHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHC
GLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAA
CCCCHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHEEEE
IPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSW
CCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
SGDRRARSLLAESDLALYQAKKLGRNRVEFFTRQLRRLAEELKLGLERGEIVPYYQVQLD
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
ARTREVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAEIDAAILKNVLEDRLFWLLQG
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
FAVPRIAVNISASRLADPTLLGKLRKLDIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQ
CCCCEEEEEECHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDV
CCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIAEGIETEAHAVVLAQLGCDGLQGYAFGYPAPAAETARLFSPMASGIEKQKTAIGGTV
HHHHHCCCCHHHEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]