| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is 209550591
Identifier: 209550591
GI number: 209550591
Start: 3075920
End: 3077251
Strand: Reverse
Name: 209550591
Synonym: Rleg2_3015
Alternate gene names: NA
Gene position: 3077251-3075920 (Counterclockwise)
Preceding gene: 209550592
Following gene: 209550590
Centisome position: 67.81
GC content: 59.31
Gene sequence:
>1332_bases ATGGCGATTTCAGCAAAGTCCAGATCGAGACAGGTGCTCATCGGGGAGGCGGACGCCGATAGTAGCCTGAACGACAATGT TCCGGGCGTGCATCCCGGCCACGAGCTTTCCGAATTGCGCAATGCGCAACGGCAGCCGGCCGGCGAAACGGTGATCCATT ACACACGTTTTGCGCAGATATCCTCCTTTCCCGATCATCCGGAAACCGCACCGGCCGCTCCGCTCTCCGCGCCGCCGATG GATGCGGCGGTGGAAAAGCAGGATGACGAGCAGAAGCCGGTGCGGCGACGGCTGGCACTGACTTGTGTTGGCTCGCTGCT TTTCCACGCAGGGCTGGCGGTCGCTCTTGCTTTGTTCGTACCGAAACCTCCGAATGAAGTGATTGAAGATGCCGGTGAGG CTGTCAGCGTCATCGTGTTTGGCGATTCCGATATTGACCAGACTTCGGCAGGTGACCCCGAACTGGAATTGAAGCCGGAT GAAATTGCCGCAGAGGAAGTTAAGCCGGATACGGTTCAATCGACGGCTGTCACTGACGAACTTCGGCCGACAGAGACGCA GCCCCAAGAGGTGACGCGTGTTTCGCCCGAGACCGTTGTGGCTGCGGAGCCAGAGATTCTCGTTTCTCAGAATCCCGCCG AAACCTTCGTCGCTCAGCCGATGGCGACGGTAGTGCCGGAGCAGCCCGCGCCTGATGTGGTGCCGACCATCGTCCCACAA CAGGCGATGACGGCTGCGGTGCAGCCGGTGGAAGTTCAGCCAGAGGAAGTTCAGCCAGAGGAAGTTCAGCCAGAGGAAGT GAAGCCCGTCGAAACCGCCGAAGTCTCGCCGAAACCCGAAGAGAAGCCGGAGCCGAAACCGGCGTCAAAGGTTGAAAAGC CGAAACCGGATACAAAAGAGCAGCCTCGGAAGAAGGTGGAGCCTACGGGTGGAAAAAATGGCGCTGATCGGCGAGACATG AAGAGAGGCGTAACAACAGGTCAGGACGCGCCAGAGTTTAATGGCATCGCAACGACAGGGGGCAGAGGCGATGGCATTGG AAGCGCGGCTGTCGCCAACTATCCTGGCAAGGTGCAGAAGCGTATTCGCCGCGCAATTCGGGTGCCTGACGAATACAAGA GGATGGGCGGAGCAATTTCTGTGCGTCTCAAATTGACGATTGATGGAACGGGCAGGCTGTCGTCAGTTTCCGTCGCCGGC AGCTCAGGTATTCCGGACTTGGACAAGGTTGCTCTCGATGGCGTACGCCGCGCCGCGCCGTTTCCGCCTTTGCCGCCCGA GTGGGGTAAGGCCAGTTGGAGCTTCACCCAGGAGGTTCAGGTCAGTCGATAA
Upstream 100 bases:
>100_bases TCTCGTCACCCGCTCGCAGATTTCGGTTCCCTTCGAGGGCTAAGATAACGCCGGGGATGATCCCCGGCGGACATGTTTCA GGCTGTCCGAGGCGTAGACA
Downstream 100 bases:
>100_bases AATATGATAAAAATAATCAACTTTATACTTTACTCTAAAAATCAAGTTTAATAAGATCCACCCGCACACGCAGGAATCGT GTGACGATCAACGAGTGAAC
Product: TonB family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MAISAKSRSRQVLIGEADADSSLNDNVPGVHPGHELSELRNAQRQPAGETVIHYTRFAQISSFPDHPETAPAAPLSAPPM DAAVEKQDDEQKPVRRRLALTCVGSLLFHAGLAVALALFVPKPPNEVIEDAGEAVSVIVFGDSDIDQTSAGDPELELKPD EIAAEEVKPDTVQSTAVTDELRPTETQPQEVTRVSPETVVAAEPEILVSQNPAETFVAQPMATVVPEQPAPDVVPTIVPQ QAMTAAVQPVEVQPEEVQPEEVQPEEVKPVETAEVSPKPEEKPEPKPASKVEKPKPDTKEQPRKKVEPTGGKNGADRRDM KRGVTTGQDAPEFNGIATTGGRGDGIGSAAVANYPGKVQKRIRRAIRVPDEYKRMGGAISVRLKLTIDGTGRLSSVSVAG SSGIPDLDKVALDGVRRAAPFPPLPPEWGKASWSFTQEVQVSR
Sequences:
>Translated_443_residues MAISAKSRSRQVLIGEADADSSLNDNVPGVHPGHELSELRNAQRQPAGETVIHYTRFAQISSFPDHPETAPAAPLSAPPM DAAVEKQDDEQKPVRRRLALTCVGSLLFHAGLAVALALFVPKPPNEVIEDAGEAVSVIVFGDSDIDQTSAGDPELELKPD EIAAEEVKPDTVQSTAVTDELRPTETQPQEVTRVSPETVVAAEPEILVSQNPAETFVAQPMATVVPEQPAPDVVPTIVPQ QAMTAAVQPVEVQPEEVQPEEVQPEEVKPVETAEVSPKPEEKPEPKPASKVEKPKPDTKEQPRKKVEPTGGKNGADRRDM KRGVTTGQDAPEFNGIATTGGRGDGIGSAAVANYPGKVQKRIRRAIRVPDEYKRMGGAISVRLKLTIDGTGRLSSVSVAG SSGIPDLDKVALDGVRRAAPFPPLPPEWGKASWSFTQEVQVSR >Mature_442_residues AISAKSRSRQVLIGEADADSSLNDNVPGVHPGHELSELRNAQRQPAGETVIHYTRFAQISSFPDHPETAPAAPLSAPPMD AAVEKQDDEQKPVRRRLALTCVGSLLFHAGLAVALALFVPKPPNEVIEDAGEAVSVIVFGDSDIDQTSAGDPELELKPDE IAAEEVKPDTVQSTAVTDELRPTETQPQEVTRVSPETVVAAEPEILVSQNPAETFVAQPMATVVPEQPAPDVVPTIVPQQ AMTAAVQPVEVQPEEVQPEEVQPEEVKPVETAEVSPKPEEKPEPKPASKVEKPKPDTKEQPRKKVEPTGGKNGADRRDMK RGVTTGQDAPEFNGIATTGGRGDGIGSAAVANYPGKVQKRIRRAIRVPDEYKRMGGAISVRLKLTIDGTGRLSSVSVAGS SGIPDLDKVALDGVRRAAPFPPLPPEWGKASWSFTQEVQVSR
Specific function: Unknown
COG id: COG0810
COG function: function code M; Periplasmic protein TonB, links inner and outer membranes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47326; Mature: 47194
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISAKSRSRQVLIGEADADSSLNDNVPGVHPGHELSELRNAQRQPAGETVIHYTRFAQI CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHH SSFPDHPETAPAAPLSAPPMDAAVEKQDDEQKPVRRRLALTCVGSLLFHAGLAVALALFV CCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PKPPNEVIEDAGEAVSVIVFGDSDIDQTSAGDPELELKPDEIAAEEVKPDTVQSTAVTDE CCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEECCHHHHHHHCCCCHHHHHHHHCC LRPTETQPQEVTRVSPETVVAAEPEILVSQNPAETFVAQPMATVVPEQPAPDVVPTIVPQ CCCCCCCHHHHHHCCCCEEEECCCCEEEECCCHHHHHHCCHHHHCCCCCCCCCCCCCCCH QAMTAAVQPVEVQPEEVQPEEVQPEEVKPVETAEVSPKPEEKPEPKPASKVEKPKPDTKE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHH QPRKKVEPTGGKNGADRRDMKRGVTTGQDAPEFNGIATTGGRGDGIGSAAVANYPGKVQK HHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCHHHHH RIRRAIRVPDEYKRMGGAISVRLKLTIDGTGRLSSVSVAGSSGIPDLDKVALDGVRRAAP HHHHHHCCCHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC FPPLPPEWGKASWSFTQEVQVSR CCCCCCCCCCCCCCCCCCEECCC >Mature Secondary Structure AISAKSRSRQVLIGEADADSSLNDNVPGVHPGHELSELRNAQRQPAGETVIHYTRFAQI CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHH SSFPDHPETAPAAPLSAPPMDAAVEKQDDEQKPVRRRLALTCVGSLLFHAGLAVALALFV CCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PKPPNEVIEDAGEAVSVIVFGDSDIDQTSAGDPELELKPDEIAAEEVKPDTVQSTAVTDE CCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEECCHHHHHHHCCCCHHHHHHHHCC LRPTETQPQEVTRVSPETVVAAEPEILVSQNPAETFVAQPMATVVPEQPAPDVVPTIVPQ CCCCCCCHHHHHHCCCCEEEECCCCEEEECCCHHHHHHCCHHHHCCCCCCCCCCCCCCCH QAMTAAVQPVEVQPEEVQPEEVQPEEVKPVETAEVSPKPEEKPEPKPASKVEKPKPDTKE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHH QPRKKVEPTGGKNGADRRDMKRGVTTGQDAPEFNGIATTGGRGDGIGSAAVANYPGKVQK HHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCHHHHH RIRRAIRVPDEYKRMGGAISVRLKLTIDGTGRLSSVSVAGSSGIPDLDKVALDGVRRAAP HHHHHHCCCHHHHHCCCEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC FPPLPPEWGKASWSFTQEVQVSR CCCCCCCCCCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA